Stae032675.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- -
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000308.1:379251-380903[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-10 3.8e-07 30.9 0.0 3 39 17 53 15 59 0.91 2 2 9.8 7e+03 -2.0 0.1 11 22 134 146 134 146 0.78
Sequence Information
- Coding Sequence
- ATGCCAACAGTATATAAGAAAAAAACAAACCGGGGCAAATGGACCCAAGCTCAACTAACTGCAGCTGTTGAGGCCGTCCGAGATTCTACAATGTCAAAAAAAGCTGCGGCAAAACATTTTGGCATTCCTTTTACGACTTTTAGAAGGCTACTTAAAGGACCAGACCCTACAAAACCCAGTCTGGGACCCGCGTCCTGTTTAGGAGAAGAAAGAGAACAAAAAATTGTTCTTCATATCAAAAAACTTCAGGCCCACGGGTTTTCTCCCTCTAGGAAGGAAGTTTGTCAAATGGCCTTTAGATTGGCCGAACAATGTGGAATAAGGCATCAATTCAATCGTGAAAAACAACAAGCTGGAAAAGACtggttcgccttatttatgaaacgccattctgatctagcagttcgcaaatcggagggagtttcccaggctcgagcaaaagcaatgtccagagctgaagtgtcaatatatttccaattgctggaaaagacactagttgaaaatgatttgttggacaaaccgggtcatatttataatatggacgaaaccggatgccagcttaacaatcgaccctcttcagtgatcgctgcgaaggggtctcgaaacgttgccgcaataacatccgcggagaaaggggagaccattacagtcatagcatgctgtaatgccgaaggcacttttttgccaccagcttctgttttcaaagGCAAAAACAAAAAAGCTGAGTTTGAAGACGGGATGCCACCTGGATCTACAGTTTACATGGGTGGTAAATCAGCCTATGTGAATAGTGAAATATTTTTTAAATGGCTCAAAGAACACTTCGTTCCAAGGAAGCCGGAAGGAAAAACAATTTTAATTTTGGATGGCCATTCTTCACATTGTAGCAATGTGGAAATGTTGGAATATGCCATAGAGCAACAAATAATACTTCTGTGCTTGCCACCACACACTACCCAATTTCTGCAACCGTTGGATCGATCATTTTTTAAGCCATTTAAAACTTATTTTTATGAAGCATGTAATGCTTTTATTAAAAATAACCCTACAAGAAAGATATCCCGCTTGAAATTCGGGATGCTTTTGACTCAAGCATGGATCAAATCAGCAAATCCTCAAAATGGAATTTCAGCATTTTCATCGACTGGAATATTTCCCCTGAATCGTGATATAATACCCGATTACGGGTATATTGAAAGCAATATCACACCCAATGAAACTGAGACTGTCACGAATGAAATTCCGTCCTTGCAATCAAATTCCGTTAGAGAATTGACCCCACCATCAATGCAATTATCCAATCAGCAAGAAGATCCTGAAACACCAAGTGCAAGTAATATAACTCCAGGAAAAATGCTGAATTTGATATCTCCAATACCGTCAACATCAAGGGGTATCACTCATCATCCGAGGGCTCAAAAGTCTCGAGTTTTAACATCCATGGAAAACTTGACATCACAAAAACAAAAAAATTTAAAGAGAATGAAAATTAAAAAAACACAAAGAAAATAA
- Protein Sequence
- MPTVYKKKTNRGKWTQAQLTAAVEAVRDSTMSKKAAAKHFGIPFTTFRRLLKGPDPTKPSLGPASCLGEEREQKIVLHIKKLQAHGFSPSRKEVCQMAFRLAEQCGIRHQFNREKQQAGKDWFALFMKRHSDLAVRKSEGVSQARAKAMSRAEVSIYFQLLEKTLVENDLLDKPGHIYNMDETGCQLNNRPSSVIAAKGSRNVAAITSAEKGETITVIACCNAEGTFLPPASVFKGKNKKAEFEDGMPPGSTVYMGGKSAYVNSEIFFKWLKEHFVPRKPEGKTILILDGHSSHCSNVEMLEYAIEQQIILLCLPPHTTQFLQPLDRSFFKPFKTYFYEACNAFIKNNPTRKISRLKFGMLLTQAWIKSANPQNGISAFSSTGIFPLNRDIIPDYGYIESNITPNETETVTNEIPSLQSNSVRELTPPSMQLSNQQEDPETPSASNITPGKMLNLISPIPSTSRGITHHPRAQKSRVLTSMENLTSQKQKNLKRMKIKKTQRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00984161;
- 90% Identity
- -
- 80% Identity
- -