Stae029894.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- -
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000251.1:475324-475887[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-12 6.9e-09 36.5 0.1 4 45 20 61 17 61 0.96 2 2 6.5 4.7e+03 -1.4 0.1 14 21 140 146 133 147 0.47
Sequence Information
- Coding Sequence
- ATGCCAAACGTTTACGTCAGAAAAAGTAATTCAAACCGTGGATTATGGACACAAAGTTCCTTAAGTGCTGCAATTAATGACATAAAAAACAACATTATGTCCATTAACTTTGCTGCAAAAATTTATAATGTTCCAGCAACAACAATCAGAAGACACCTCAAGAAAAATACCGAAGTTAAGCGACTTGGCCCATCTGCTTGTCTCGGAACCGAAATCGAGTTGAAGATTTGCAACCACATCAAAAAAATGCAGGCTCATGGATTTGCCCCAACTAGAGACGCAGTCTGCAGAATGGCCTTTCAAGTGGCAGAAAAGTTCAACGTTCAACATCGGTTTTCCAAGGACTTAAAAAAAGCTGGCAAAGATTGGTTCAAACTTTTTTTGATGAGGCACCCAGACTTGTCCATACGGAAGGCGGAAGGCGTTTCTCAAGCAAGAGCCCTTGGAATGAACAAGGAAGAAGTTGGGACATATTTCGATTTGTTGGAGAGGGTTCTTACAGAAAATGACCTGATGGGCAAGGCGAGAAACATTTTCAATATgacgagactgggtgtcaattaa
- Protein Sequence
- MPNVYVRKSNSNRGLWTQSSLSAAINDIKNNIMSINFAAKIYNVPATTIRRHLKKNTEVKRLGPSACLGTEIELKICNHIKKMQAHGFAPTRDAVCRMAFQVAEKFNVQHRFSKDLKKAGKDWFKLFLMRHPDLSIRKAEGVSQARALGMNKEEVGTYFDLLERVLTENDLMGKARNIFNMTRLGVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -