Stae011800.1
Basic Information
- Insect
- Sphaerophoria taeniata
- Gene Symbol
- Clic
- Assembly
- GCA_943591125.1
- Location
- CALSBT010000068.1:1574503-1591048[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-11 2.6e-08 34.6 0.0 4 41 172 209 170 213 0.88 2 2 1e-07 7.4e-05 23.6 0.0 6 38 284 316 280 322 0.80
Sequence Information
- Coding Sequence
- ATGAAAAAGCATGCTTGCCGCTCTCACACTCAATCTCTCAATCTCTCTCTCTACCACTCCATTGGCGATGAATTATCCTATTATTTTAACTACAAATTCCAGGACGAAACGAATACCATCGAAGACTCTGAATCAGAACTCATACTGATGTCAACTATCCAAATAGACCAACTCGTTCTACCAATACCACAAACTTGCCCAACAAATGACGAATACATTATATTCGAGCTTAAAAGTGATGCCGATGACACGCCATCGTACAACTATGTCATAGCAAACCCAAAAGAACCACCGCCCGATCCTGAGGATCAGCCAAACACCAAAGAAAACACAAATACCGAAAATATCATATCCACCGTTACAGAGGTCTTATCCAATCCAGGACCATACATTGTGAGCGTTGAATTACCAGTAGTTGAAGGAAGTGAAACATTTGAAAATGAAACAGAAACACCACCGATAGTCGTCCGAAAAGATGCTTCACCAAAAACGAAACGTGCTATGGCGCGTAAAAGACTTCCAGAGGCTGTTGATGCAGTAGTAAACGATGGTTTGACTATTGGCAAGGCTGCTAAAGCCTTCGGAGTGACGAAAAGTACACTATGGAAAGCTGTCAATAAGAAAACTGATCAGCGAAAGAAGAAGGTTGACGAAGATCTCAATAAAAAAATCGTCGATCGTATTTGTGCGGGTGAATCGCTGTCGGAGATCTCGAGATCATTGAAAGTTGCCAAATCCACCATTCACCTGCACAAAGTTCGACTCTCGCAGAGTGGCAAGTTGCCGCGACATGTCACCTTGAAACCTCCGGTAGATAAAGTCAAACAGCTTGCTTTGAAAGATCGAATTATTCAGGCCTATCGTGGGGTTAGGGTGAATGGGATGTCTTTGCGTTTGGCATCGTCCTTTTTCTCAGTACCACGATCGACGCTATGGTGCTACATACGAAAGTTTAGAGCTTCTCAGAAGAAACAAGAAGAAATTGCCGGAAACGGTAAAAGCCAAAAAGAAGCGAGTGCCGAAGAGGATGAAGAAAGTGATGAAGAGGATGACGAGGAGGATGAAGAAGAGGATGAAAATGAATGCATGTCCGATCAACGGTCTGTTTTGAGCGAAAGGGCCCTCCAGGAGGACTTTGATTTATTGGATGCTTATTGCGAACAGGAGGGCAATAGTGTGAATAAAGACTTGCTTATAAGTGTCGACTTTGAGACATTCGAAGAGTACGCATCAACAATCGATGGAAGACGCAAGGGAGCTTGTCTTTTCTGCCAAGAATATTTCATGGATTTGTATTTGTTAGCAGAACTGAAAACAATCAGCTTAAAGGTCACAACAGTTGATATGCAAAAACCTCCACCAGATTTCCGTACCAATTTCGAGGCAACACATCCGCCAATACTAATCGACAATGGTCTGGCAATTTTGGAAAATGACAAAATCGAGAGGCATATCATGAAAAATATCCCCGGTGGATATAATCTCTTTGTGCAGGACAAGGAAGTGGCCACCCTTATTGAGAACCTCTATTCAAAATTGAAACTCATGTTGGTCAAAAAAGACGAAAACAAAAACAACGCCTTACTGTCACATTTGAAGAAGATAAACGATCATTTGGCATCACGCGGAACACGTTTTCTAACTGGCGACACAATGTGTTGTTTCGATTGTGAATTGATGCCAAGATTACAGCACATTCGAGTGGCTGGAAAGTATTTTGTTGATTTTGAAATACCCACTCATTTGTCCTCCTTGTGGCGTTACATGTATCACATGTATCAATTGGATGCTTTCACGCAGTCCTGTCCTGCCGATCAGGACATTATCAATCATTATAAATTGCAACAGATGCTCAAAATGAAGAAACACGAGGAACTGGAAACACCAACATTCACAACGTCAATTCCGATTGATATTTCAGAATAA
- Protein Sequence
- MKKHACRSHTQSLNLSLYHSIGDELSYYFNYKFQDETNTIEDSESELILMSTIQIDQLVLPIPQTCPTNDEYIIFELKSDADDTPSYNYVIANPKEPPPDPEDQPNTKENTNTENIISTVTEVLSNPGPYIVSVELPVVEGSETFENETETPPIVVRKDASPKTKRAMARKRLPEAVDAVVNDGLTIGKAAKAFGVTKSTLWKAVNKKTDQRKKKVDEDLNKKIVDRICAGESLSEISRSLKVAKSTIHLHKVRLSQSGKLPRHVTLKPPVDKVKQLALKDRIIQAYRGVRVNGMSLRLASSFFSVPRSTLWCYIRKFRASQKKQEEIAGNGKSQKEASAEEDEESDEEDDEEDEEEDENECMSDQRSVLSERALQEDFDLLDAYCEQEGNSVNKDLLISVDFETFEEYASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENDKIERHIMKNIPGGYNLFVQDKEVATLIENLYSKLKLMLVKKDENKNNALLSHLKKINDHLASRGTRFLTGDTMCCFDCELMPRLQHIRVAGKYFVDFEIPTHLSSLWRYMYHMYQLDAFTQSCPADQDIINHYKLQQMLKMKKHEELETPTFTTSIPIDISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -