Sjav014560.1
Basic Information
- Insect
- Sphaerogastrella javana
- Gene Symbol
- nfxl1
- Assembly
- GCA_037040025.1
- Location
- JBANCZ010008097.1:2009-5453[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 1.1e+05 -8.1 6.4 15 19 153 157 152 157 0.82 2 20 0.13 7.4e+03 -0.3 0.4 4 10 188 194 187 194 0.95 3 20 6.6e-08 0.0037 19.8 15.5 1 18 202 218 202 219 0.98 4 20 1.6 9.3e+04 -3.8 2.6 6 10 245 249 244 249 0.89 5 20 9.8e-08 0.0056 19.3 17.0 1 19 255 274 255 274 0.98 6 20 8.2e-07 0.047 16.3 13.1 1 19 309 329 309 329 0.98 7 20 1.1 6.5e+04 -3.3 0.4 1 8 353 359 353 360 0.60 8 20 1.9e-06 0.11 15.1 15.0 1 18 363 380 363 381 0.97 9 20 0.71 4e+04 -2.7 0.4 1 5 390 394 390 399 0.73 10 20 2 1.1e+05 -5.0 2.3 5 10 404 409 404 409 0.91 11 20 0.00036 21 7.8 17.2 1 18 415 432 415 433 0.97 12 20 3.4e-08 0.0019 20.7 14.7 1 19 442 460 436 460 0.90 13 20 0.36 2.1e+04 -1.7 1.2 6 10 488 492 487 492 0.92 14 20 0.00075 43 6.8 13.0 9 19 505 515 497 515 0.90 15 20 0.0038 2.2e+02 4.6 5.5 1 11 527 536 527 537 0.95 16 20 0.87 5e+04 -3.0 1.4 6 10 594 598 593 598 0.88 17 20 0.0024 1.4e+02 5.2 9.6 1 12 604 615 604 615 0.96 18 20 2 1.1e+05 -6.4 6.9 1 10 629 636 629 636 0.88 19 20 0.025 1.4e+03 2.0 15.1 4 19 646 661 644 661 0.93 20 20 1.8e-06 0.1 15.2 10.8 1 17 712 727 712 731 0.95
Sequence Information
- Coding Sequence
- atggaaaagtttaATAAAGCGCAAGCCAAAAATTTAGCAGCGGCCCAAAAACTGGTGGATGCCTATGCGTCTAGCTCCGAGGACGAGGGCGAATTAGATGAACAGCATATTTTGGATCTGCTATATAAACACTATGAGAGCACTCCGGATGCGGCAGCTAAGCAGTCGAATGGTAATGGACATGCAGTCAATCGCACAGCAACATTTTTGGAGAATACTTTGCACTCGGGCGCTGCCACGTGTCTAATATGCATAGGCAGTATTAAGCGCGTCGAGGCCATATGGTGCTGCAAGAGCTGCTATTGCTTTTATCATCTGAATTGCATACAGCGCTGGGCAAACGATAGCGTCATGCAGTTGAAGGTGAAGgcggagcagcaacagcagcagcagggacaCTATAATCATCTGGGTGAATATGTACCCGCCAAGCGACAGAAGCCGCTGCACTGGTGCTGCCCGCAATGCCGCAAGGATTACCAGCCCACGGAGCGTCCAACACAGTATGAATGCTTTTGCGGTAAGGAACTGAATCCACAGCCGCAGCCGTTTCTGGTGCCGCACTCCTGCGGCGAGATATGTGGCAAACTGTTGCAGCCCAAGTGTGGACATGACTGCAAGCTGCTCTGTCATCCTGGCCCGTGTCCGCCGTGTGCGCAACTGGCGCAAACGAGCTGTCTGTGCAGCAAATCCGCGCCCCGTTCGATGCGTTGCATAGATAAGAACTGGCAGTGTCAGGAGAAGTGTCAAACTCTCTTGGCCTGTGGCAAACACAAGTGCAACCAGCGCTGTCATCGCCCAGGCCAGTGCCCGCCTTGCAGCAGCAAGAGCTCTCAGCGTTGCGTGTGCCAGCGTGAAACAAAGGTGGTCAACTGTTCCGAACCCAAGTGGCACTGCAAAAATATCTGTGGGGCGCTCTTTGACTGTGGTGCGCACAAGTGTGAGCAGCTGTGCCATGACGCAGATTGCAAAGGTGGACCGTGCCCATTGGGCCTGCGCAGCTGTCCCTGCGGCAAGAGCACACAAATGGGAAACTGTAGTGTACAGGTTGACAGCTGCGGCGATACCTGCCAGAGGCTCTTGTCCTGCGGCAAGCATCACTGCACGCAACGCTGTCATCGTGGTGCCTGCAATGAGTGTCTGCTGCGTACGAAGAAGCGTTGCCGTTGCGGACTGCATGAGAAGGAGCTGCCCTGCAGCAAGGAGTTCACCTGTGAGACCAAGTGCAGGCAGCTGCGCGATTGCGGCAAGCATGCGTGCAATCGCAAGTGCTGTGGTGATCAGTGTCCACCATGCGAGAAAATCTGCGGCAAGCAGCTAAGCTGCAACAAGCACAAATGTCAGTCCGTGTGCCACAATGGACCCTGTTATCCCTGCAAGCTGGAGACGCAAATCAACTGCCGCTGCGGTAAGACGCGCCGCAGCGTGCCCTGTGGCAGGGAACGCAGTGCACGCATTGCGTGTCAACAGCTCTGCCGAATTACAGCCAAATGTCATCATGAGGTGAAACATCGCTGTCACAAGGGTGAGTGCCCGCCGTGCCCGCAGCCTTGCGGGCTGCCCAACGACAGCAGCGGCTGTGGCCACATTTGTCAGGCTCGCTGTCACGCAGCTATGCGCGTGCCCAGGTCAGCTGTGGCTGGTGCAATGCGTCCACAGGGTCAAAAGTATGAATACCGAGCATTGCCTCATCCGCGCTGTGAGCAGCCTGTACAGGTCACTTGCATTGGCGGCCATGAACTGGCCACGTGGCCCTGCTGGAACTCGAAGCCCACCTCCTGCCAGCGCAAGTGCGCCCGCCAACTCAATTGCGGAAACCATTGCTGTGATCTGGTCTGTCACACGGTGCCCAATCCTCAGGATTTGCTGCATCAACAGCCTGGGTGCGGCACTTGTGAACAGGGCTGCGTCATAGCCCGCACTGAGGGCTGTGTGCATGCCTGTACGCGAGGCTGCCATCCGCCACCCTGTGCGCCCTGCACGGCTGtcatcaaaagcaaatgccaCTGCAGTCTCACTCAGCTGGTTTACAAGTGCACGGATTATTTTCAGCCATTGGAGACGCCGCAGCAGCTGAAGCAAGTGCGGGAGAAGCTGCTCAGCTGTGGCAATCGTTGCCTGAAAAATTTCGCCTGCGGTCACCGCTGCCTAACCATCTGCCACTCTGGAGACTGTCCTAGCCCAGAGCTGTGCCGCAAAAAGGTGCGCATCTTTTGCTCCTGCAAGCGGCTGAAACTGGAGGTGGCTTGCGACAAGCATCGGGCTGGTCAGACAGCCGTAGACTGCGATGACCATTGTCAGGCTGAGCGCAGCAGGGCTCAGGCctcagagcaacagcagctggagcaacGGCAACGTCAGGAGCAGGAAAAGAATCGCATAGAGCTGGAGAAATTTGAGCAAAAATTCGGCAAACGCAAACACAAAGAGCGAAAAGTCAACGATGTGGCACAAGCCAAAACCGAGATCAATTGGCAGCGTCTAGGCATCTATGCGCTGTGCTTGCTAGTGGTAATGGGCGCACTGGGCGTGGCCTACTATGCGGATGCATAG
- Protein Sequence
- MEKFNKAQAKNLAAAQKLVDAYASSSEDEGELDEQHILDLLYKHYESTPDAAAKQSNGNGHAVNRTATFLENTLHSGAATCLICIGSIKRVEAIWCCKSCYCFYHLNCIQRWANDSVMQLKVKAEQQQQQQGHYNHLGEYVPAKRQKPLHWCCPQCRKDYQPTERPTQYECFCGKELNPQPQPFLVPHSCGEICGKLLQPKCGHDCKLLCHPGPCPPCAQLAQTSCLCSKSAPRSMRCIDKNWQCQEKCQTLLACGKHKCNQRCHRPGQCPPCSSKSSQRCVCQRETKVVNCSEPKWHCKNICGALFDCGAHKCEQLCHDADCKGGPCPLGLRSCPCGKSTQMGNCSVQVDSCGDTCQRLLSCGKHHCTQRCHRGACNECLLRTKKRCRCGLHEKELPCSKEFTCETKCRQLRDCGKHACNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCKLETQINCRCGKTRRSVPCGRERSARIACQQLCRITAKCHHEVKHRCHKGECPPCPQPCGLPNDSSGCGHICQARCHAAMRVPRSAVAGAMRPQGQKYEYRALPHPRCEQPVQVTCIGGHELATWPCWNSKPTSCQRKCARQLNCGNHCCDLVCHTVPNPQDLLHQQPGCGTCEQGCVIARTEGCVHACTRGCHPPPCAPCTAVIKSKCHCSLTQLVYKCTDYFQPLETPQQLKQVREKLLSCGNRCLKNFACGHRCLTICHSGDCPSPELCRKKVRIFCSCKRLKLEVACDKHRAGQTAVDCDDHCQAERSRAQASEQQQLEQRQRQEQEKNRIELEKFEQKFGKRKHKERKVNDVAQAKTEINWQRLGIYALCLLVVMGALGVAYYADA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -