Sjav002167.1
Basic Information
- Insect
- Sphaerogastrella javana
- Gene Symbol
- -
- Assembly
- GCA_037040025.1
- Location
- JBANCZ010000321.1:19118-21821[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.4 1.5e+03 2.6 2.3 3 23 332 354 330 354 0.91 2 11 0.19 81 6.5 1.2 3 21 494 512 492 516 0.91 3 11 0.012 5.1 10.3 0.3 2 23 538 560 537 560 0.92 4 11 0.078 34 7.7 0.5 1 23 577 600 577 600 0.95 5 11 4.5 2e+03 2.2 0.3 1 22 605 626 605 629 0.87 6 11 0.0043 1.9 11.7 0.4 1 23 682 705 682 705 0.95 7 11 0.11 46 7.3 0.1 1 21 710 730 710 731 0.92 8 11 7.2 3.1e+03 1.5 0.8 2 23 755 776 754 776 0.92 9 11 0.00015 0.064 16.3 3.5 2 23 789 809 788 809 0.97 10 11 1.3e-05 0.0055 19.6 0.8 1 23 815 838 815 838 0.96 11 11 1.4 5.9e+02 3.8 0.8 1 12 869 880 869 881 0.88
Sequence Information
- Coding Sequence
- ATGGACAATGAAGTGGATGATCTGGATGACACTCACCTCTGCATCAAGTGCAATGCAACCATTGTTGGTCTGAGCAAGTATATTGCCCACCGCAAGGACAACTGCCTGAGTCTAGGCAGAGCGGAGCATCAGGTGGTAGCCAAGCAGGTGGTTACGCCCACCACAACAGCAggcggtggcagcagcaacttggATCACAGCTATGACGGCTTTCATTACACGGAGCCAGAGGCTCCGAGCAGCTACCTGCGCAAGACCACGGCCAGTCATGGCGGCAAGACGTCCAAGACGCTGACGGAGGCCTATGACATGACCTATGAACTGGGCGCGGATGTCTTTTTCTCGTCGCTGCAGCTACAGAGTGTAACGACGGGCGGCAAAACGGGCGCACGTCCTCTAAAATTTGTGCACACACCAGAGGCCAgtgaggaggaggaggaggatgaGGAGCCGGATGAATTCGAGGCGGAGGAGGAGGATGCAGAACCGGAACATGAGCAGGAGCATGACGCTGACGACGATTACGATGCGCGACGCCATTCGCCGCCGCCAGCCACGCACACGGGTGGCAAGTGGAAGCCGGAGCAGCGTCCACAGATGCGTCACTCCCCGCCCACGGTGCCTGACACCCATACGGGTGGCAAGTGGAAGCCGGATCAGCGCCCACAGCTGCGTCACTCCCCGCCAACGGTGTCTGACACTCATACGGGCGGCAAGTGGAAGCCGGATCAGCATCCACAGCTGCGTCACTCACCGCCAACGGTGCCTGCCTCACACACTGGCGGCAAATGGAAACCCGAGCACCGTCCGCAGCTGCGTCATACCCACATGGAACGTCTCTCGCCAAGCTGGGATGAGCCGCCCGAGGACGCCTCCCCCGAGCATCCGCCCGCAGAGCACACACACGGCAAATGGGTGCCAGGCAGCAAGCAGCTGGAGTACCGTCAGAACATCGATCTGACCAAGCTGCAGCAGCCCAATGCCAGTTACTGGTGCAACATCTGCTGTCGCCGGCTCAAGTCGCGGCTTAATTACGAGCAGCATCTGCGCAGCGGCTACCATCAGCGTCGCGCCGATGCCGAACGCCAGTTGGAGCAGGTCAATCTTAATGGTGCCAACCTGACGCTGACCGAAGATTTCAAGGCGAAGCCCGTggaacatcagcatcagcaacgaCAGCTTCGACGCCGTCGCGTCAAGTTGCTGCGCTGCGAGCTCTGCCGGCACAGCTTGGCCAGACATTTGATGGGTAAGCACCTCATCTCCCACTATCACTACCGAcgcctgcaacagcaacagcaacagcagcaaccgcaatCGCTGCATGCCATACTAGAGCACATGGGCAGCATTGTGCGCCAAGCGCCCTTCCAGTGCCTGCCCTGCCGTTACTACACCAACACGGAGCAGAACTTTCAGGACCATTGGCTCTCGGCGGATCATGTGCGTCACACGGAGCAGTTGGGCGGTCACTTCTGGTGCGGCTACTGTCAGTACGAGTGTGCGGACAACGAACAGATGTGGCGCCACCTGTTGCATCCGACGCACAAGGAGGTCCTCTTGGCGTTGAATCGCTCGGTACCCGTGTGCATAGCACAGCGACGCGCCCTGACCTGCAGCGTCTGCCCAGAGCGTTTCCTCTACAATGCCCAGCTGCGTCGTCACTATGCAAACTATCACGTGGGCGTGGCGCCTGTAGGCACTGCCTCTGATGATTATCAGTGTCGGTTTCGTTGTGGCGTGTGTGGAGCGGCGCAGCGTTCTCGCGTGGCGCTGCAGCGACACGAGAAGCACCAGCATCGCCTGAGGCGGTACTACTGTGCACCTTGTCGTTTGGACTTTGAGACGCCACAACAGGCGCGACGCCACCGCAATCTCGTACAGCACAAGCGACTGGCGCTGGGACACACCAAAGCTACAAAATCTCGCAGATCATGTAAATCCGAACAACAGCCGGACACGGAACTAGAGCATATGCTGTGCGAGGTGCTGCAGGAGCCATTGCAGTCAGAGTCACCGAAATTGGAGCCTGCCACTAGTTACCATCGTTGTGCCAATTGCTCGCTGATCTTTGAGACACCGCAGGCCCTGATACAGCATCGCCGTGATGAGCATCCTATCGATAATCATGCGTGCTTGAGCTGTGGCGCCAGCTTTCAGTCCGCCCAGGCACTGGGACGTCACACCCGCAGCTGCCAGCCAATCGCTTCCAGCTCCagtgccgcagcagcagcagcagcagcacaactgAGCAACAGCTGGCACTGTGACCAATGCAGCTTCACAGCCAACTATGAGGCGGATCTGCTGTATCATCGGCTCTTCCACAGTCGCGACTCCTCCATTGGTAAGAACGAACTGCTCCAGTGTCCGCTCTGTACGAAGCGTTTCCGCAAGCATTCGCTGCGTGCTCATCTCCGGAATCATACCAACGAACGCATCTTCGCATGCAGCGAGTGCCAGGCCGGATTCGCCAGGCGGCACAATCTCAAGAATCACATGGCCACCATGCATGGCAAGCGGCATGATACGGCAACAGGGACCACCACCAACATGTCGAAACCGCTGAAGCCAAAGACCGACAAGGATGCACCGCGCAGGAAGTTTCCATGCGGCAGCTGTGACAAAGTATTCGCCAAAAAGTGA
- Protein Sequence
- MDNEVDDLDDTHLCIKCNATIVGLSKYIAHRKDNCLSLGRAEHQVVAKQVVTPTTTAGGGSSNLDHSYDGFHYTEPEAPSSYLRKTTASHGGKTSKTLTEAYDMTYELGADVFFSSLQLQSVTTGGKTGARPLKFVHTPEASEEEEEDEEPDEFEAEEEDAEPEHEQEHDADDDYDARRHSPPPATHTGGKWKPEQRPQMRHSPPTVPDTHTGGKWKPDQRPQLRHSPPTVSDTHTGGKWKPDQHPQLRHSPPTVPASHTGGKWKPEHRPQLRHTHMERLSPSWDEPPEDASPEHPPAEHTHGKWVPGSKQLEYRQNIDLTKLQQPNASYWCNICCRRLKSRLNYEQHLRSGYHQRRADAERQLEQVNLNGANLTLTEDFKAKPVEHQHQQRQLRRRRVKLLRCELCRHSLARHLMGKHLISHYHYRRLQQQQQQQQPQSLHAILEHMGSIVRQAPFQCLPCRYYTNTEQNFQDHWLSADHVRHTEQLGGHFWCGYCQYECADNEQMWRHLLHPTHKEVLLALNRSVPVCIAQRRALTCSVCPERFLYNAQLRRHYANYHVGVAPVGTASDDYQCRFRCGVCGAAQRSRVALQRHEKHQHRLRRYYCAPCRLDFETPQQARRHRNLVQHKRLALGHTKATKSRRSCKSEQQPDTELEHMLCEVLQEPLQSESPKLEPATSYHRCANCSLIFETPQALIQHRRDEHPIDNHACLSCGASFQSAQALGRHTRSCQPIASSSSAAAAAAAAQLSNSWHCDQCSFTANYEADLLYHRLFHSRDSSIGKNELLQCPLCTKRFRKHSLRAHLRNHTNERIFACSECQAGFARRHNLKNHMATMHGKRHDTATGTTTNMSKPLKPKTDKDAPRRKFPCGSCDKVFAKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -