Basic Information

Insect: Sphaerogastrella javana
Gene Symbol: -
Assembly: GCA_037040025.1
Location: JBANCZ010004838.1:1801-7849[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.07 30 7.9 0.4 1 23 514 536 514 536 0.96

2 7 0.34 1.5e+02 5.7 0.6 2 19 541 558 540 559 0.97

3 7 6.4e-06 0.0028 20.6 0.3 1 23 565 587 565 587 0.99

4 7 0.0033 1.4 12.1 4.2 1 23 597 619 597 619 0.98

5 7 0.00076 0.33 14.0 0.1 2 23 626 647 625 647 0.95

6 7 1.2e-06 0.00051 22.9 1.3 1 23 653 675 653 675 0.98

7 7 8.9e-05 0.038 17.0 3.5 1 23 681 703 681 703 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.07	30	7.9	0.4	1	23	514	536	514	536	0.96
2	7	0.34	1.5e+02	5.7	0.6	2	19	541	558	540	559	0.97
3	7	6.4e-06	0.0028	20.6	0.3	1	23	565	587	565	587	0.99
4	7	0.0033	1.4	12.1	4.2	1	23	597	619	597	619	0.98
5	7	0.00076	0.33	14.0	0.1	2	23	626	647	625	647	0.95
6	7	1.2e-06	0.00051	22.9	1.3	1	23	653	675	653	675	0.98
7	7	8.9e-05	0.038	17.0	3.5	1	23	681	703	681	703	0.98

Sequence Information

Coding Sequence: ATGGACGGACTGATTGCCATTAATGATAGCGCATTATCGCAACAAATCGAATTTATACTACAAGATGCTCCCATGGAGCAAGATGACGAGCATCAGCTGCAGCTCAatatggcagcagcagcggcagtagcagcagcagcggcagcagcagcagcagcagcaacaacaacagcagcagcagcaacaacaacgacgacgacgtcaacGACAAAGCTCGATAACCACCACCCACcgacaacaaatgcaacaataacaacagcagcagcaacgacaacaacaacagcaacaaacagcgcTTCCCCATAcatcaatcacaacaacaacatcagcaatcatcacagcaacaataaccaccacaacagcagcaatagcaacagtagcaacagcaacagcaacaacaacaacagtctgAGCTCTGATGAAcatcagcaactgttgctgcagcaacataggcagcagcaacaacagcagcaacatcatcatctgTTAAATGGACGTCGCATTATTATACAATCAACAGGCAGTGGCGCCTCCACCGTTATATCAGCAGCTGATATCAAAGAGGAGCAGCAAGATCTTGAGGATGAACCTGAAGAGGAggacgaggaggaggaggatgaTCCCGAGCTGAATGATGAGAATTTACAGGACATTGAAGAGGAGGCACAGGCAGCTGAGGCCGATGAAGAGCCTGAAACGGCGACAcatttgcaacagcaacatcatcaccatcagcagcaacaccaacatcaacatcatcaacaacaacaacaacagcagcagcagcagcttcatcaccaacagcaacaacagcaacaccagcagcagcatttgcaaaCACAAGTGAAACTTGAAATGGACGAACTGCCCgaagatgaggatgaggaAGATGAGGACGATGATGAGCAAATGTCACAAtcagcacaacagcaacagcaactcgagACCTTGCAGCAACTGGAGTACTCGGCAGCAGGAGGACAGCAATTGGTGCTGCCAGCTGGAAGCATTGTGAGCACCGGTGCTCGCACTTTGGCTGTGCCTGTGTCGGAGGCAGCATTGGTGCAGCTGCAACGTCGCTCAGTCTATATAAGCAATGCCACAATGAGCAGCCTGGGTGGTGCAACCTATGTGCGTATGCCTGCCGCAGCGGTTATCAGTCGCAATCCGATGACCGTATTGAATGTGGTGCAGCAATCTGGTGGGCCTACAGCTCAGCTTATATTGCAGACGGCGGGCAcgtcacaacaacagcagcagcaacagcagcagcagcaacaacagcaacagtccaCAGTACCAACAGCAgtggctgcaacaacagcagcagcgccgtcCCAAAGcaatgagcaacagcagcagcagcaaatggcgGCTATTGCACTggctcaacagcaacaacagcaacaacagcagcagcagcagcaacaacaacagcagcaacagcagcagcagcagcaacatcatcagtcCATAaagccagcaccagcagctacagcagcaggaacaacagcaactattGCCACAACCGCAACGAGTTACCAGTGCATGGAGTGCGTGGAAAAGTTCGATTCAAAGGAACTATTCGATATACATCGCAGCGGGCATGCCAACAATATGAAATGCGCCATATGCAACATGGttttaaaatcattgaagAACTATGAGAAGCATTGCCTGCGCTGCAAGCCCTACGAGTGCCAAATCTGTGGACGTGTTGTACGCTTTCGGCCCAATTTTATAAAGCATATGCGCGTGCATACGGGCCAACAATCGGAGCggcataaatacaaatgtgaGGTATGCCACAAGGAGTTTATGAGCTTTGAATACTTTAAGGTACACAAGAAGATACACAATGAGAATGTCAATCTAACCTGCGAGATCTGTGGCAAGGTGTTCAGTGCGCTTGCCTCACTGCGTGGCCACTCCAAGCTACACTCCGGCGTCAAGCTGCACAAATGTGATGTATGCGGCAAGGGATTCGGTCAGCGGTATAATCTCAAGatacatgcacgcacacacaccggCGATTTTCCATTCGAGTGCAAGGTGTGCAAGAAGAAGCTGCATACGCAGTCGTCGCTGCAGACGCACATGCAGGTGCATCTGCGTGATCAGCCAAAGGGCAGCAATAGCACCGCCAGCgctaacaataacaataataataataataataataatagcagcagcagtagcgctggcagcaacaccagcagcagcagcagcagtaatggcaacaataacaacatcaacatcaacaataatattagcaacaataacaataacagcatcaGTAGCAATGCAACAATTAAACTGGAACCAGATCTGGATATGCCCAGTACCAgtttgcaacagcagcagcagcagcagcaactgcaacatcatcagcagcagcaactgcaacatcagaATGATATGGACATGGATGATCAATCTGGATTCAGTGATGATGACTTTGATAGCGCATCGGCTGTGCATAGCTCGAACAATCATCGTTTAACCACCGGCGAGGATTCCTCAAATGAATCCTCATCGAATGCCTcgatgcagcaacagcatcactCCTCCTCAGCCAGCTCAACAAACTCGCAACACCAGCCGCTGTcatcgcaacagcagcaacagcaacaacagcaatatatTGTTTCTACGCCCACACGCACCATTGTCATCAATAATTATAtgcgccaacaacagcaacagcagcagcaatcgacAGATGtcacaaatgcagcagcagcaacaggtgcaacaacaacaaccgttGGCAATGGTGTGCTGCACACGCAGGTCATACAAAGCGGTGCTGGCACCAGCAACGGTCATCATATTATCAACAGCAcgaacaacaccaacaacaatatcagcagcagtaacatcaacaacaacagcaacagcagccacagtcccagcagcagcagtagcctcaacaacaacaacaacagtgcgacagcaacagcagcaggcaatgCCAGCAACATGGCACAACAATTGCTCCGCAAGACGCCCATAATACACTCTACGGGCACACTCAGCTCGGCACTCGCCAGCGTTGTGCAACAGACGAGCGTTGGCTCGCCAGCGCAGTCGCCATCATCTTCATCCACATCGTGTTCCTCCACCGTGCTTGTGTCCAAGACGACAGGTGTGCCGCTATCCATAGCCTCATCGGCGGCACTCGGCGGCTCAACGATAATACGTAGCACGCggaatcatcatcatcatcagcagcagcagcagcaacagcagcagcagcagcagaacaatTGCAGCAGTAATCAGCGTGCAACAGGAGGAGCAACAGGAGCTGGACAACAGCAGCGTAATAACCACCGAAACCACCACCGACGTCGTCATTTGGCTGACAtggacgatgatgatgatgacgatgatgaggatgaaaCTAATGCTCAATTAAGAGCTGCCACCAAtggacatcatcatcagcagcaacaacagcaacagcaacaacagcagcagcatcagctgcaTACGAATCACAATCATCACAAtcacaatagcagcagcagcagtaacagcaacaacaacaacaacaaccaacagcagcagcaacaccaccctaatcaccatcaacaacagcaacagcatcatcatcatcatcatcatcatcataaccataatcacaatcatcataatcatttcgatgatgatgatgacgatgagaAATCATCACCGTCCCTGGCCACAGCCGCCATTATCAAAGTCGAACCGAATCTATATTCATCTGGTTCCGGTGATAATTCCAATGATATGTTCATCAAGGAGGAAGTGATGTTCGAAGATTCCGCTGCACCACATTCACCACAATCACCGCCAAGTTCGAAATTTCGCATCTCGAATTTTGACAGCGATCTGGTGGATCATCATGTCGATTTGAATCATTCGCTGCCACCATATGGCAACCTATTCGAGCCACACTCCATACCCGACAGCATACCCGTACAGCTCTATcccgatgatgatgatgattttcgTTTGGATCACAGTTCGTTGGGTGGCCTGCACAATACCTCATCATCCACCACAGATGGTGATTTCATAAAAAAGGAATGGGTCTATGGCAGTGCCACCAGCAGCTATGCCATGAATGGCAAATTCGATGATGATAGCGATGCCCTATGCGATGCAGccaatttcatttacaattga
Protein Sequence: MDGLIAINDSALSQQIEFILQDAPMEQDDEHQLQLNMAAAAAVAAAAAAAAAAATTTAAAATTTTTTSTTKLDNHHPPTTNATITTAAATTTTTATNSASPYINHNNNISNHHSNNNHHNSSNSNSSNSNSNNNNSLSSDEHQQLLLQQHRQQQQQQQHHHLLNGRRIIIQSTGSGASTVISAADIKEEQQDLEDEPEEEDEEEEDDPELNDENLQDIEEEAQAAEADEEPETATHLQQQHHHHQQQHQHQHHQQQQQQQQQQLHHQQQQQQHQQQHLQTQVKLEMDELPEDEDEEDEDDDEQMSQSAQQQQQLETLQQLEYSAAGGQQLVLPAGSIVSTGARTLAVPVSEAALVQLQRRSVYISNATMSSLGGATYVRMPAAAVISRNPMTVLNVVQQSGGPTAQLILQTAGTSQQQQQQQQQQQQQQQSTVPTAVAATTAAAPSQSNEQQQQQQMAAIALAQQQQQQQQQQQQQQQQQQQQQQQQHHQSIKPAPAATAAGTTATIATTATSYQCMECVEKFDSKELFDIHRSGHANNMKCAICNMVLKSLKNYEKHCLRCKPYECQICGRVVRFRPNFIKHMRVHTGQQSERHKYKCEVCHKEFMSFEYFKVHKKIHNENVNLTCEICGKVFSALASLRGHSKLHSGVKLHKCDVCGKGFGQRYNLKIHARTHTGDFPFECKVCKKKLHTQSSLQTHMQVHLRDQPKGSNSTASANNNNNNNNNNNSSSSSAGSNTSSSSSSNGNNNNININNNISNNNNNSISSNATIKLEPDLDMPSTSLQQQQQQQQLQHHQQQQLQHQNDMDMDDQSGFSDDDFDSASAVHSSNNHRLTTGEDSSNESSSNASMQQQHHSSSASSTNSQHQPLSSQQQQQQQQQYIVSTPTRTIVINNYMRQQQQQQQQSTDVTNAAAATGATTTTVGNGVLHTQVIQSGAGTSNGHHIINSTNNTNNNISSSNINNNSNSSHSPSSSSSLNNNNNSATATAAGNASNMAQQLLRKTPIIHSTGTLSSALASVVQQTSVGSPAQSPSSSSTSCSSTVLVSKTTGVPLSIASSAALGGSTIIRSTRNHHHHQQQQQQQQQQQQNNCSSNQRATGGATGAGQQQRNNHRNHHRRRHLADMDDDDDDDDEDETNAQLRAATNGHHHQQQQQQQQQQQQHQLHTNHNHHNHNSSSSSNSNNNNNNQQQQQHHPNHHQQQQQHHHHHHHHHNHNHNHHNHFDDDDDDEKSSPSLATAAIIKVEPNLYSSGSGDNSNDMFIKEEVMFEDSAAPHSPQSPPSSKFRISNFDSDLVDHHVDLNHSLPPYGNLFEPHSIPDSIPVQLYPDDDDDFRLDHSSLGGLHNTSSSTTDGDFIKKEWVYGSATSSYAMNGKFDDDSDALCDAANFIYN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -