Basic Information

Insect: Sphaerogastrella javana
Gene Symbol: ush
Assembly: GCA_037040025.1
Location: JBANCZ010002287.1:648-8329[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.038 16 8.7 0.0 1 20 190 209 190 211 0.90

2 9 0.00029 0.12 15.4 0.8 1 23 267 289 267 289 0.98

3 9 0.049 21 8.4 1.0 2 21 329 348 329 349 0.92

4 9 0.05 22 8.3 2.9 2 21 734 753 733 754 0.93

5 9 0.0093 4 10.6 0.0 3 21 806 824 804 825 0.91

6 9 2.6 1.1e+03 2.9 0.2 2 23 892 913 891 913 0.95

7 9 0.0039 1.7 11.8 1.3 1 23 919 941 919 941 0.99

8 9 0.00057 0.24 14.4 0.8 1 23 996 1019 996 1019 0.97

9 9 0.31 1.3e+02 5.8 0.7 2 20 1131 1149 1130 1151 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.038	16	8.7	0.0	1	20	190	209	190	211	0.90
2	9	0.00029	0.12	15.4	0.8	1	23	267	289	267	289	0.98
3	9	0.049	21	8.4	1.0	2	21	329	348	329	349	0.92
4	9	0.05	22	8.3	2.9	2	21	734	753	733	754	0.93
5	9	0.0093	4	10.6	0.0	3	21	806	824	804	825	0.91
6	9	2.6	1.1e+03	2.9	0.2	2	23	892	913	891	913	0.95
7	9	0.0039	1.7	11.8	1.3	1	23	919	941	919	941	0.99
8	9	0.00057	0.24	14.4	0.8	1	23	996	1019	996	1019	0.97
9	9	0.31	1.3e+02	5.8	0.7	2	20	1131	1149	1130	1151	0.91

Sequence Information

Coding Sequence: ATGGACTCTGAGCTGTGgttgtttcaatttgaagGCAATCTACATACCAAAGAATTAGGCGCACAAGAGCGAAGCACTGAGAAGGACCAACAGCAGCCGGAGTTTGAGGAGCAAATTGAGGAACAAGATCAAGTCGCCAGCCAAGCTAGTAATGTTTTGGAACTATCAATGGAGACTGACATGGTCCAGGACATGACCGATGAACAAGAAGAGCAACGAAAACAGGAAGCGACGGACAGCTCGACCACGCCGCCATGTAGTCCAACTCCCGAACTGGTACCCAAGCTAGAGTTACTAGAGCAACCAGCAACACCGCCGTCAGGTACGGCCACACCCAGTCCACCAAGTACACCTACACTCGCGCCCACACCCTCATCGGTGCTCCCCAAGTTACGACTGAATGCATTGCTCGCCTCTGATCCTGCACTAAAGCCAAATGCCAAGGAGCTCAATCTACCAGAGGCGCGTCTTTTGGGCCAAACACCGCAGCTAATCAAACCAGAGCTACAACCACAAAACCAACCAGATTCAAGTACCATCATTGAGCCTCTGCTAAAGCCCGCACGCTTTATGTGCTTGCCCTGCGGTATAGCTTTTAGTTCACCCTCTACTCTCGATGCACACCAGGCTTACTATTGTTCCCATCGCAACAAAGACAATGAGGAAGAGGTAGCCCCTGGCAGCGATAAAAACGGCTGCTCTGGCAACGCCGCTGCTAGCTCAGCTTCCATACCCAACACAAATAGCAATGACAACAGTGCCGAACCACCGAATAAAGTGGCGCGTACTGGAAAGCAGTACGCATGCACGCAGTGCTCGTATAGCGCAGACAAGAAGGTGTCTCTCAATAGACATATGCGTATGCATCAGACATCGCCCGCATCAAGCCTTCCTAGCTTGTCAAACCTCGCCAGCCTCACATCTAATGGTGTTGTAGCTCCAGCTGCCGTGCTCGACGAGAGCCCTAGTCaaCAAATTGATCGCTACTGCAGTGACTGTGATATTCGTTTCAACAACGTCAAGACCTATCGAGCACACAAGCAGCACTATTGCAGTTCCCGCCGCAGCGACGGTCAGCTCACTCCCAAACCGGAACCAGTTGCGATAGCAGGTAACGCCAATATAAATGCTGCAACATCCGGCACAGCAACGTCTGGGGGTGTTAGTGCGCCGGGTAAGCACTCGCCGCAAGCTCAACGGAACAAGACGCCCACGCCGGCTATGgttgccgcagcagcagctgctgcagccgctgccgctgcctcgcTGCAGGTGGCGCCACCACAGCCTTTCCTAGCACTGCCGACCAATCCCATCATTATTGTGCCCTGCTCCCTCATTAGAGCAGCCAGTCTAATACCAGGACCACTTACCACCTCCACATCAGGCATTGCCAATCCCGAATCCACCTGCTTTACGCTTGATAATGGCACACTTAAACCGCTGGCTACAGCGcttaatataaatgcattgaCCGTCAATGTCACACCCAATCCAGCGACTCTGAAACCATTGCCTTCCATTTCAGCCCTAGAACCAGATCACCAGCATAACGCTACTCCCAGTACTGCAGAAGCGGACACCGAAAGTAGTCCACCGGAGCCAAAACGTAAAGAAACTGCAGGCGGACGCGAAACTACTCCACTGGATCTATCCTTTCGACGGTCTCCCATATCGGCGATTTTGCAACGTCAACGTTTGGCGCGCTCCGCAGGTGCATTGGTCGAAGTTGAGGAGGCACTGCTGCCGGTGTGTAAGGAAAATGTGGAAAGTGGCGGCAATGTGACTCCCGAGCAGATTGTATGCGCACCCTCTCTACCCAGCAGCCCCTCAATGAGTCCTTCCCCGAAACGGCGTGCGTTGAGTCCACGCAGCTCCGGAGCTGGAAGCTCCGCCTCCATTTCCCCACCCGTGCTGGGAGTGAGCGTTCCGCAGCTTCTAGAAAGCTTACCAACGTTACGGTCCATACTGCCAGCGGACTTTGGACTATCCGAGTCACTATTGGCCAAGACAAATCCTGAGCTGGCGCTAAAGTTagcggcagctgcagccgctgcggTCGCAGGCGGCACTACTTCAGCGGAACTAGCCAGCAAATTGGGATTAGGTGCATCTGCTGCATCTGGCCCCACAGCAGCTGTCACAGCCCCACCAACGCCTGCTGCTCAACCACAGATCTACGTAAAGCAAGGTGTGTCCAAGTGTAAGGAGTGCAATATTGTCTTTTGcaagtatgaaaattacttggCCCATAAGCAGCACTACTGCTCTGCCAGGAATCAGGATTTGAACGAACCTGAAATTAAGAGCTGTAGTTCGCCAACGAGTACTGCGGGAGGAACAGCAGCTGGTACAGGCGCGAACACCAACAATGCAAACGTGGAAACATCTCCTGTTGCTTATCAACAGCTTATCTGCGCAGCTTGTGGTATTAAGTATACTTCTCTAGATAATCTACGCGCCCACCAGAACTACTACTGTCCCAAGGGTGGTGCCACTGTTCCATCTACTGCTACATCAGATGCACCTGCAACGGTAGTTCCATCTCCGCTGTCTAAGGAAAAGTGCGTCAAATGCAAAACGTTACATGAGCCGAGTCAAGTGTGCGTTCCGCTTCCATCAGCATCCACACAAACCAGTGCGGCCTGCACCATAACCTCGAATAGTATTAATAAGTGTCCCGTTTGTTGTGTGGTCAGTCCTACTGCTGCTTTGGCACGCAAGCACATGGAAATGCATGGGACAGTGAAGGCTTTTCGATGCAGCATCTGTCAATACAAGGGAAATACACTGCGTGGCATGCGCACTCACATACGCACCCATTTTGACAAGAAAACAGCAGATGTAAACGAGGAGCATTACATGACATGCATCTTTGAGGACGACGTACCAACTACAGTTGCTCCTCCGCTACCACAGGATTTACCAGTAGTTGCCGGATCAGATGAGCAAttggagcagcaacaacagcatccgTCACAGATTTATAGTTGTGACTACTGCAGCTATGTGTCCACCTACAAGGGCAACGTGctGCGGCACATGAAGCTGTTGCATCCACATGTGTCGATCAGTTCACCATCCATTTCCCCTGAATCACGTGACCTGGAAACCAATACCCACACAGACGCGAGTCTCGTTAATGGGGAACGGGGGATCACAAGTTTTCACATAAAATCGGAGCCACAGGAACATCCACAGCCACAAAAATCAGAAACAAATACTACATTGAGTCTAGTGCATGACAATAATAACTCACCCATTAGTACATCTCACAGCCTCATTAAGGCAGAGCCTTTGGATTTAGGCATTGATGTGTCCCCACCCACACTGCCACCACCCGTTGCAAACTCGACACTAGCCCCTAGCGCTGCTGAGGCCATGAAGAAGTACTGCTCTACGTGTGACATATCTTTTAACTATGTGAAAACTTTTCTGGCCCACAAACAATTCTACTGTAAGAGCAAACTTCATCGACCCGAGGCCAACGACAGCCCCAGCCCGAATCATCCGGCTGCCGCAATGGCCACTCCCATGCCACTCCAATCGCCAAATGAACTCATTATGTTGCAAAAGAATAAGGAGAACCTGCAGGAGGCGGCTATTTGA
Protein Sequence: MDSELWLFQFEGNLHTKELGAQERSTEKDQQQPEFEEQIEEQDQVASQASNVLELSMETDMVQDMTDEQEEQRKQEATDSSTTPPCSPTPELVPKLELLEQPATPPSGTATPSPPSTPTLAPTPSSVLPKLRLNALLASDPALKPNAKELNLPEARLLGQTPQLIKPELQPQNQPDSSTIIEPLLKPARFMCLPCGIAFSSPSTLDAHQAYYCSHRNKDNEEEVAPGSDKNGCSGNAAASSASIPNTNSNDNSAEPPNKVARTGKQYACTQCSYSADKKVSLNRHMRMHQTSPASSLPSLSNLASLTSNGVVAPAAVLDESPSQQIDRYCSDCDIRFNNVKTYRAHKQHYCSSRRSDGQLTPKPEPVAIAGNANINAATSGTATSGGVSAPGKHSPQAQRNKTPTPAMVAAAAAAAAAAAASLQVAPPQPFLALPTNPIIIVPCSLIRAASLIPGPLTTSTSGIANPESTCFTLDNGTLKPLATALNINALTVNVTPNPATLKPLPSISALEPDHQHNATPSTAEADTESSPPEPKRKETAGGRETTPLDLSFRRSPISAILQRQRLARSAGALVEVEEALLPVCKENVESGGNVTPEQIVCAPSLPSSPSMSPSPKRRALSPRSSGAGSSASISPPVLGVSVPQLLESLPTLRSILPADFGLSESLLAKTNPELALKLAAAAAAAVAGGTTSAELASKLGLGASAASGPTAAVTAPPTPAAQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQDLNEPEIKSCSSPTSTAGGTAAGTGANTNNANVETSPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGATVPSTATSDAPATVVPSPLSKEKCVKCKTLHEPSQVCVPLPSASTQTSAACTITSNSINKCPVCCVVSPTAALARKHMEMHGTVKAFRCSICQYKGNTLRGMRTHIRTHFDKKTADVNEEHYMTCIFEDDVPTTVAPPLPQDLPVVAGSDEQLEQQQQHPSQIYSCDYCSYVSTYKGNVLRHMKLLHPHVSISSPSISPESRDLETNTHTDASLVNGERGITSFHIKSEPQEHPQPQKSETNTTLSLVHDNNNSPISTSHSLIKAEPLDLGIDVSPPTLPPPVANSTLAPSAAEAMKKYCSTCDISFNYVKTFLAHKQFYCKSKLHRPEANDSPSPNHPAAAMATPMPLQSPNELIMLQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -