Basic Information

Insect: Sphaerogastrella javana
Gene Symbol: -
Assembly: GCA_037040025.1
Location: JBANCZ010009002.1:2644-4761[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.017 7.5 9.8 1.1 6 23 282 299 282 299 0.99

2 9 0.00025 0.11 15.6 3.3 1 23 305 328 305 328 0.93

3 9 8.9e-05 0.038 17.0 1.8 1 23 336 358 336 358 0.97

4 9 7.3e-05 0.032 17.2 0.4 2 23 364 386 363 386 0.96

5 9 0.16 67 6.8 0.1 2 23 392 413 391 413 0.95

6 9 0.63 2.7e+02 4.9 4.3 2 23 422 443 421 443 0.91

7 9 0.0003 0.13 15.3 0.9 2 23 451 473 450 473 0.95

8 9 8e-06 0.0035 20.3 0.6 3 23 481 501 480 501 0.99

9 9 6.6e-05 0.029 17.4 6.9 1 23 507 530 507 530 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.017	7.5	9.8	1.1	6	23	282	299	282	299	0.99
2	9	0.00025	0.11	15.6	3.3	1	23	305	328	305	328	0.93
3	9	8.9e-05	0.038	17.0	1.8	1	23	336	358	336	358	0.97
4	9	7.3e-05	0.032	17.2	0.4	2	23	364	386	363	386	0.96
5	9	0.16	67	6.8	0.1	2	23	392	413	391	413	0.95
6	9	0.63	2.7e+02	4.9	4.3	2	23	422	443	421	443	0.91
7	9	0.0003	0.13	15.3	0.9	2	23	451	473	450	473	0.95
8	9	8e-06	0.0035	20.3	0.6	3	23	481	501	480	501	0.99
9	9	6.6e-05	0.029	17.4	6.9	1	23	507	530	507	530	0.98

Sequence Information

Coding Sequence: ATGATATGCCGCCTGTGCCTGAATAGCGCCAACGACaccatacaaatatttgaaggCGTCGGTTTAACGCTAAATGTGGCCGCAGTGTTGgccaaatatttttggtttcaGcCCAAATGTGATGATCCCATATCCACCGAGATCTGCGTAAACTGCTGGACGCGCGTCAATGATTTCAATGAGTTCTATGCAAGCGTTGAGAAGGCGCATCGCCTGCTAACCGAACGCTTCTCGCTCAGAGGGGGCAGCCAGAGTGAGCAGCCGGAGACCATATGTCCCAAGCAGGAGATGCCACAGCCGCTGGATGATGAGCTGCGCAGCGAGGCGGATTTGGGTGATCACCTTCTGCCAGATGATGGCTTATATGACGGCGGCAGTGAGAACGATGCAGGTGCACCCTTTAGCAATGAGCAGTTCCTGAACGATgtgctgccacagcagcagcagatgaacGAAAACGGAGAGATTATAACTGctgaagagcagcagcagcagccgcagcaacagtcgcagcTGCAACAGATCAATCTATTGGAGCCTGTGCGACGTGAAACACGCGCCACACgcgccaaaagcaaaacaatcaCAGAGCAGACCACAAATGATGAGAAACCATCGATGCCAGGCAAACGACGTGGACGGACAAAGACCGTTAAGAGTATAGAGGAGCTGCCAAAGAATAAACGCTATGCGGACTACAAGAAATCCATGCTGGAAATCGATGAGAAGATTGCCAAGCACATGCGGCTCACATGCAGCATCTGCCATGAGGGACAGGAGACgtttctgttgctgtgcaAGCACATGATGCAGGTGCATCACCGCAAGGGCTATGCTGTGTGCTGCAACAAGAAGTTCTACAAGCGTTCCTTTCTCACCGATCACATTGAGCGTCATGCAAATCCGGAGAAGTTCAAATGCCAGCTATGTGATCGCACCTTTGCGGACAAGCAGTGCCTACGCAATCACGAGTTGCTCAAGCATCAGCCGGACGAGCAGAAGACGTTCGTGTGCGAGCATTGCCCCAAGCGTTATACCAAACAGTATTTATTGGATCAGCATCGCATCATACACAAGGAGCGCAATGTGCCCTGTGATATATGCGACAGACGTTTTCCCAATGTTTCGATGCTCTGCACGCACGTGAAGATGGTCCATGGGAACTATGGCACCATGTGCGATATCTGCGCTCAGGTTATACGTGGACGTGCCGCATTTCAGCGTCATCAGCTGGAGCATGCGGGCATCACAGATCAGAAGGTGCAGTGTGATATATGCGGCTCCTGGCACAAGAACAAGTACAGCCTAAAGAAGCATGTACGACGTCACAATGTCAGCTCCGAGGAGTGCACCTGCAACATATGCGGCAAAATCTCACCGAATCGCAGTGCCATGTTGAGTCATCAGCGATATGTTCACAATGCGGATCGTGTGCATGGCTGCAGTGTGTGCAACAAGAGATTCAAGAAGGCCATCAATCTCAAGGAGCACATGGCCACCCATACGGGTGAGGTGCTCTACAAGTGTCCGCACTGCACCAAGACCTTCAATTCGAATGCCAATATGCATTCGCATCGCAAGAAAACGCATCCCAAGGAGTTTGAGGCGGCGCGCCAGGCACGTCTACAGAATCGCATGGAACCCAAGGTGGATGTCGATAGTAAAAATGATGCAAATCTTATAACAATAACCACAGAAACGGTAAATGATGGACATCTGCAGACGCACAATATTGTGGTGACGACCAGCAACAATGGGCACAGCGATGATGATGTTGGGgaggatgacgatgacgacgacgataatGATGAGGAGGGGGAGGAAGAGGTGGAATTCAAGGGCTCACACATAGAGTTTATGCTATCGCTCAGTCCACCGAACGTGGAATAG
Protein Sequence: MICRLCLNSANDTIQIFEGVGLTLNVAAVLAKYFWFQPKCDDPISTEICVNCWTRVNDFNEFYASVEKAHRLLTERFSLRGGSQSEQPETICPKQEMPQPLDDELRSEADLGDHLLPDDGLYDGGSENDAGAPFSNEQFLNDVLPQQQQMNENGEIITAEEQQQQPQQQSQLQQINLLEPVRRETRATRAKSKTITEQTTNDEKPSMPGKRRGRTKTVKSIEELPKNKRYADYKKSMLEIDEKIAKHMRLTCSICHEGQETFLLLCKHMMQVHHRKGYAVCCNKKFYKRSFLTDHIERHANPEKFKCQLCDRTFADKQCLRNHELLKHQPDEQKTFVCEHCPKRYTKQYLLDQHRIIHKERNVPCDICDRRFPNVSMLCTHVKMVHGNYGTMCDICAQVIRGRAAFQRHQLEHAGITDQKVQCDICGSWHKNKYSLKKHVRRHNVSSEECTCNICGKISPNRSAMLSHQRYVHNADRVHGCSVCNKRFKKAINLKEHMATHTGEVLYKCPHCTKTFNSNANMHSHRKKTHPKEFEAARQARLQNRMEPKVDVDSKNDANLITITTETVNDGHLQTHNIVVTTSNNGHSDDDVGEDDDDDDDNDEEGEEEVEFKGSHIEFMLSLSPPNVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -