Sjav003375.1
Basic Information
- Insect
- Sphaerogastrella javana
- Gene Symbol
- L
- Assembly
- GCA_037040025.1
- Location
- JBANCZ010000689.1:13052-23157[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2e-05 0.005 19.8 2.9 1 23 191 213 191 213 0.98 2 17 0.4 1.7e+02 5.5 6.2 1 23 219 241 219 241 0.97 3 17 1.9e-07 8.3e-05 25.4 3.2 1 23 247 269 247 269 0.99 4 17 1.4e-05 0.0061 19.5 0.4 1 23 275 297 275 297 0.99 5 17 0.25 1.1e+02 6.1 0.1 2 23 375 399 374 399 0.89 6 17 0.0013 0.55 13.3 0.2 2 23 431 453 430 453 0.95 7 17 0.081 35 7.7 0.7 1 23 547 569 547 569 0.97 8 17 0.051 22 8.3 0.5 2 23 577 598 576 598 0.91 9 17 0.001 0.45 13.6 0.0 1 23 606 631 606 631 0.90 10 17 5.8 2.5e+03 1.8 1.7 2 23 667 689 666 689 0.95 11 17 0.0029 1.2 12.2 1.1 1 23 746 769 746 769 0.97 12 17 0.0057 2.4 11.3 1.2 2 23 978 1000 977 1000 0.96 13 17 0.13 56 7.0 0.1 1 23 1006 1028 1006 1028 0.92 14 17 0.69 3e+02 4.7 1.0 2 23 1036 1057 1036 1057 0.95 15 17 0.46 2e+02 5.3 1.2 1 23 1158 1180 1158 1180 0.94 16 17 0.16 69 6.7 0.0 1 23 1190 1212 1190 1212 0.95 17 17 0.00025 0.11 15.6 1.2 1 23 1217 1239 1217 1239 0.97
Sequence Information
- Coding Sequence
- ATGATGGCCTTAAAGATGTTGTACCGTGGTCCCAGTTCGCGTTTGgagaatttaattgaaaaaatacagGCTACCAAAGAGATAACAAATAGCGACATGTACAGCACGCACACCTCGTCCAGCTATTCGCCCAGTATCTCGGACGGCACACTGACGCCCAActcgcagcagcaacagcacccacaacagccgcagcacaCCCTACTGGTCGCGGCGGGCGAGGATTGCGCCCTGGAGGAGCAGGGCAAGGCCAATGGGACGGCCAGTGAACGCGACAAGGACAGGGAGCGTCATAGGGAGCGCGAGGGTGTGAAACCAAAGCGTGCATCCCatttgcatcatcatcatcatcattatcatcatcagcaggCGCTGAAAATTGCGCAAAAGCTGCGCAAAATCAATAAGGAGGCCAAGTTGCAAGGAGGCACTGCAGCAGCATtgggaggagcagcagctgctggagGTGTGGCAGCAGGTGGAGCAGCGGTAGGTGGCGCCACCGCGGGCGTCGCCACAAAGTTCGATAAGTTGACAGGCGAGGGCATTAAGAGTCGCGGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGTCTCGGCTACTTGAAGCATCACGTTCAGAGTCACGCCGAGCACTTGCCTTTCAAGTGCGAATACTGCGCCAAGCTCTTCAAGCACAAGAGGTCCAGGGATCGCCATAAGAAGCTCCACACGAACGAGCGTAACTACAAGTGTCCACACTGTGAGGCCGCTTTCTCCAGAAGtGATCATCTTAAGATCCACATGAAAACACACGACATACAGAAGCCCTTCCAGTGCTCCATGTGCAATCGGGGCTATAATACGGCGGCGGCTCTCACCTCGCACATGCAAAAGCACAAGAAGAACGCAGCAATCCTGGCCGCAGGTGGCAACCCTAATGCTCTTAACTACAGCCCACGCTCCACGGGCTCCGCCTCCATCTCGAGCAACGGGAGCCTGCACAAGCGACGGTATGCGCTGGCCCTGGCCTCCGACAGCAGCCCAAGTCGCCTGGAGTTCCCAAAGCGTGCACGGGGTGCAGCTGCTCAGGCGGCGACCACGCCCACTTTGACGCCAACTCCGCTGCTGCGCTGCAGCTACTGTCCCAAGGCAACAGAATTCGGTAGCCTGGAGCAGCTCAATGCGCATCTGCAGCTGGCGCACGAGCAGCAGACGCGACTGACGCCCGTAGCAGGTGCAGTGCCTCCGGGCGTGACAGAAGTGGTGGAGGTGCCAATGGCCAATGGGTTCCAACTGAGCTGCGAGTACTGCACCATGCGATTCGTGAATATAGCCGGACTGTTTCAGCACATGCGTGCCACGCATCTGGACAGGCTGAGCAGCCCCAACTCCTACTACGAGCACTTCAATCGTCTAGCCACCGCCGGCACGTTCAGTCCGCGGCTGGCGCTGGAGTTGCCCAAACAGCTGAAGCAGGACATGCACAGTCCGACAGTCGTGGAGCCACCCAAGgcggagcagcaggagctgccCACGGATCTGAGCAGTAACAAGCGGCGCAGCACGCCCGCTGCCCTTGGAGCAGCTGCATCCAATGCTGTGGCAGCacctgccgccgctgctgctcccaCTCCTCCTGGCGTCTTCTTTTGCAATCAGTGCAATGCAGGATTGCCAGACTTCGAGAGTTTCCGCCAGCATCTGAAATCCCACATAGCAGAGGGCATGCAGCTCTGCTGCCCACACTGCGGCCTCCAACTGCCCGAGCAGAGCGACTACGAACGCCATGTGGTGGCCCACTTCCTAATCAGCGGCAGCGAATTCAACTGCAGCGCCGCTAGCTGCGGCAAATCCTATGCCCAGGCGGATGAACTGCAACAGCATCTGAGCGCTGAGCATGTGCAGACGTTGCTCAAGTGCGGCATCTGCTCCGAGCTGTGCGAGAATCGCATGGCCATGCAACTGCATCTGGCCTGTGCCCACAGCCAGGAATCGAAACTCCTGCGCTGCAGCGCCTGCCTGGAACTCTTTCGCACGGACACCGATTTCCATGTGCATGTGAAGACGCGACATCAATTGGCCACAGGTGGAGCCTCTGCTGCAGCCACTGCTgccgcggctgctgctgcagcagctgcatctgtTAACACTGTGGCCAATCCCTTGCAGTGTATGTTCTGTCGCGTTGTGTGTGCCTCAGAGCTGGAGATGCATTTCCATTTGGCGGCGCATGCACGTCAATTCCGTTGCCCATCCTGCCCAGAGACGTTCCACGTGGAGTTCCTGCTGGACAGGCATATGCAGAGTCAGCATGGTGGCGGCGGGGGCAAGGATGGAAAGGAGGAGCAAGCAAACAGCGTGAGTAGTCTCTATGTGAATGCGCTGCTCCCgccattggcagcagcagcggcggcagcagcagcagccaacaacaacaacaacaacaacatgaacaatgGGAACAGCGGGAATAGCAACAGTGGAGGCCATAATAACCataacagcggcagcaataaTGCAAATAGTGGCAACATTGGTCAGAGTGGCAACTCCGCCCACAATGCCAACCtgctgaacaacaacaacaacagcagcctgCACATCGACTACAACGTGGCTTTCAAGGgattcgctgctgctgctgcggctggcaAATTCTACAGTCCCCTGCAGGTGGACACAGGGGGACTGAAGGCTCCGCATCCGGCTCTGATGTATGGCTTGAGTCAGCGCTATCTCATGGAGATGTATGCGGCCAAGGCCAGTTCACCGGCAGCGGATGCACCGGCCACGCCCATTGTGGCAGCCGCACAGGCTGTGCCTGGTGGCGGGGGCAACCTTAGCTGCGGAATGTGCGAGCGTCAGGATCTGCGCAACGAGGCGGAGCTGCAGTCGCATCGCAAGCTGGCCCACAATCTGAAGACGGGAGTCAGTTTGAGGTGCGCCTATTGTGCGGGTAATTTCAAGTCACGGGCAGAGCTGGAGCAGCACATGAAGAGCTGCCACAATTCGAGTGGGAAGCACAAGTGTCTCATCTGCGATGAGATCTTCCCCTCGCCAGCCATTTTGGCAGAGCACAAGCTGCAGCACTCGAAGGTGGGACAGTCGGGAAGGTGTGCCCACTGCgggcagcagctggagcatgTGGCCGCCTTTAGGGCGCATCTCACGGAGCATGGCGGGGATGGTAGCCTGCCGTTGGCATGCATCTGTTGCCGGCAGACGTTGCATTCAGAGTTTGAGCTTAGTTTGCATGCCAAGTTTCATACAAAGTCGTCGGGCGGCGGTGGGAGCCTACAGGAGCCGGTATGCGCTCTGTGCTTGGAGCCGTTACCCGGTGCCGGGGAGACGGCCAAGCTGTGCGAGAAATGCTGCCGCAAGCATAATCTTAATGGTAAACGCGCCAAGGAGCTGCATGTGACGCCCACAGTCACACCCAGTAGCGGTGGTTCTGCTGCAGCCCCGTCCTATGTGGAGCATCGTTGCAATCTGTGCAAGCTTATACTGCCGCACGCACAGAAGCTGCAGGAGCACCTGGTGGAGCATACCTTTGCCGGCACAGAGCAGCGCGGCTACAACTGTTACATCTGCTCCGCCGTCTTTACGGCACCGGCCGGCCTTCTGGGCCACATAGCGGAGCACGGTGCCCGACCCTACGACTGCAATCTCTGTCCGGAGAAGTTCTACTTCCGCGCCGAACTGGAGCATCATCAGCGCGCCCATGAGCTGCGTGCaacgccagcaccaccaccaccaactgCACTTCCTCCAACAGGAACCACAAGGATCGCCAAGCAGGAAACGCACAGTTCCACGGCCAGTTCACCGCTGGCACTCAGTCCCAGTACCCAGGTAAAGCAGGAGTACTACGAGCCAGAGCCGCAGCCGTCAGCCACGCCCTCCCCCATCCACCCACAGACGGCACAGACGCCGCCCGTCGAGGAGGAGGAGTACATCGAGGTAGAACAGGTGCCGCACGAAACGCGCGCTGCCCCCGGTGAGCTTCCCACTGCCACGCACACGGAgcgctccagcagcagcgcctaA
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEITNSDMYSTHTSSSYSPSISDGTLTPNSQQQQHPQQPQHTLLVAAGEDCALEEQGKANGTASERDKDRERHREREGVKPKRASHLHHHHHHYHHQQALKIAQKLRKINKEAKLQGGTAAALGGAAAAGGVAAGGAAVGGATAGVATKFDKLTGEGIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRLEFPKRARGAAAQAATTPTLTPTPLLRCSYCPKATEFGSLEQLNAHLQLAHEQQTRLTPVAGAVPPGVTEVVEVPMANGFQLSCEYCTMRFVNIAGLFQHMRATHLDRLSSPNSYYEHFNRLATAGTFSPRLALELPKQLKQDMHSPTVVEPPKAEQQELPTDLSSNKRRSTPAALGAAASNAVAAPAAAAAPTPPGVFFCNQCNAGLPDFESFRQHLKSHIAEGMQLCCPHCGLQLPEQSDYERHVVAHFLISGSEFNCSAASCGKSYAQADELQQHLSAEHVQTLLKCGICSELCENRMAMQLHLACAHSQESKLLRCSACLELFRTDTDFHVHVKTRHQLATGGASAAATAAAAAAAAAASVNTVANPLQCMFCRVVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGGGGKDGKEEQANSVSSLYVNALLPPLAAAAAAAAAANNNNNNNMNNGNSGNSNSGGHNNHNSGSNNANSGNIGQSGNSAHNANLLNNNNNSSLHIDYNVAFKGFAAAAAAGKFYSPLQVDTGGLKAPHPALMYGLSQRYLMEMYAAKASSPAADAPATPIVAAAQAVPGGGGNLSCGMCERQDLRNEAELQSHRKLAHNLKTGVSLRCAYCAGNFKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGRCAHCGQQLEHVAAFRAHLTEHGGDGSLPLACICCRQTLHSEFELSLHAKFHTKSSGGGGSLQEPVCALCLEPLPGAGETAKLCEKCCRKHNLNGKRAKELHVTPTVTPSSGGSAAAPSYVEHRCNLCKLILPHAQKLQEHLVEHTFAGTEQRGYNCYICSAVFTAPAGLLGHIAEHGARPYDCNLCPEKFYFRAELEHHQRAHELRATPAPPPPTALPPTGTTRIAKQETHSSTASSPLALSPSTQVKQEYYEPEPQPSATPSPIHPQTAQTPPVEEEEYIEVEQVPHETRAAPGELPTATHTERSSSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -