Basic Information

Insect: Sphaerogastrella javana
Gene Symbol: RREB1
Assembly: GCA_037040025.1
Location: JBANCZ010004021.1:2776-9365[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.03 13 9.0 0.8 1 21 243 263 243 265 0.93

2 12 0.00034 0.15 15.2 0.2 1 23 275 297 275 297 0.98

3 12 8.2e-05 0.035 17.1 7.3 1 23 303 325 303 325 0.98

4 12 0.23 1e+02 6.2 1.7 2 20 556 574 556 576 0.93

5 12 0.0085 3.6 10.8 0.1 1 23 755 777 755 777 0.97

6 12 1.2e-05 0.0054 19.7 0.7 1 23 787 809 787 809 0.99

7 12 0.00084 0.36 13.9 2.0 1 23 815 838 815 838 0.97

8 12 0.003 1.3 12.2 2.0 1 23 1103 1126 1103 1126 0.95

9 12 8.7e-05 0.038 17.0 0.3 2 23 1470 1491 1469 1491 0.97

10 12 0.15 63 6.9 6.3 1 23 1497 1520 1497 1520 0.97

11 12 0.085 37 7.6 1.1 3 23 1739 1759 1738 1759 0.91

12 12 0.0025 1.1 12.4 4.8 1 23 1765 1787 1765 1787 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.03	13	9.0	0.8	1	21	243	263	243	265	0.93
2	12	0.00034	0.15	15.2	0.2	1	23	275	297	275	297	0.98
3	12	8.2e-05	0.035	17.1	7.3	1	23	303	325	303	325	0.98
4	12	0.23	1e+02	6.2	1.7	2	20	556	574	556	576	0.93
5	12	0.0085	3.6	10.8	0.1	1	23	755	777	755	777	0.97
6	12	1.2e-05	0.0054	19.7	0.7	1	23	787	809	787	809	0.99
7	12	0.00084	0.36	13.9	2.0	1	23	815	838	815	838	0.97
8	12	0.003	1.3	12.2	2.0	1	23	1103	1126	1103	1126	0.95
9	12	8.7e-05	0.038	17.0	0.3	2	23	1470	1491	1469	1491	0.97
10	12	0.15	63	6.9	6.3	1	23	1497	1520	1497	1520	0.97
11	12	0.085	37	7.6	1.1	3	23	1739	1759	1738	1759	0.91
12	12	0.0025	1.1	12.4	4.8	1	23	1765	1787	1765	1787	0.99

Sequence Information

Coding Sequence: atgctggcagcacagcaacaacagcaacacaacacagcagcaacatcaacagcagctgatGTCAGCAGCGACTTGGAGctgcggcagcgacagcgtcGCGATTCGAGCACCTCAGAGTCATCGCTGGAGCACCTCGATCTGGGACGAACGCCCAAGaagctgagcagcagcaacggtgCACCGCAGCCGACGTCAACGCCCCATGAAACggcgacaacaacatcgacatcgCGCAAGCGCAAactgcgacagcagcaacatcaacagcagcagcagctccactCGGATGAGGATGgggagctgcagcagcagcaacaacaccagcagcacctcgagcagcagcagtcagcACAGCGTGTGCGGCACAAGCAGCGACGCAACGCCAATGCCAcagccagcgccagcatcGTGGTCGACTACAGCGCCAGCGGCGACGCCAGTTCGCTGCGAAAAAAGTTTCGACTGAATCGCAGCGGCGTCAGCACCAACGGCGACTTGTCCGAGTCGGGATTTGTCGATGCCAGTgtcagcgtcagcagcagcagcaacaacaacaacaataacagcagcagcagcagcaacaacaacaacaatgcagcGCAGTCAacgcaactgcagcagcagcagcatgcatCGAGCAGCAGCTCGGGTGGCTCCTCACCTCAGGCAGGCCTGTGCATGTCGAGCGCCGAGTCGGGTATTGGGGCGGGGGATGAGCACATGAAGTATCTGTGTCCCATATGTGATGTCATCTCGGCCACGCCCCACGAGTTCACCAATCACATACGCTGCCACAACTATGCCAACGGCGACACTGAGAACTTCACCTGCCGCATCTGCTCCAAGGTGCTCTCCTCGGCGTCATCCCTGGACAGACACGTGTTGGTTCACACGGGCGAGCGACCCTTCAACTGCCGGTACTGCCACCTGACGTTCACCACCAACGGCAACATGCACCGTCATATGCGCACGCacaagcagcatcagcaacagtcgctggggcagcagcagcaacagccgcagcagcagtcgcagtcgcagcgaCGTCAGCAACAggcggcagctgcaacagcaacaccagcaacagcagcaacagcagcggcagcagcagcagcaacaccagcgaCTACAGCACGAGCGGAGAGCTATGAGAGCGATGCTAGCTGCTCGACGGATGTGTCCAGTCgcagcagcaatagtaacagtaacagcaatagcaacagtagcgaaaacggcagcaacatgtcgcatcacaacaacaacaacaacaacagcaactgcggcaacaacaacaacaacaatgagatcgaggcagcagcaacaatgggtAAACTAAagaccatcaacaacaacaacatcattgcagagaagcaacaacaacagttgctgctggatGCGGTCGAGCAGGAGATAGATTCCGACTCAGATTCGGAGCAGGCTCAGCAGATAACCAGTACACCCGACGTGGCCACATTGTTGGCTACGAGTGAcgccgatggcgatggcgatggcgatgttGATGCCGATGCTGAGCTGGAGCCGGAAGTCCATGCAgacggcagcaacatgttgttgctgagcTGTCCCGCTTGTGAAGCGGATGAATTTGAATCACTGGCAGCGCTGTGCCAGCATCTGGATGCACAGCATGCCAATATACCCGCCAAGTGTCGCGACTGTGAGGTAATCTTTGCCAGCCATCGCCAATTGCAAGCGCACAGCTGTCGCAGtgcaaacatcaacaacaacagcaacaacatgttgctgcCTTTGCACAAGGTGGAGCGCATGGATGATTCCGATGGCGATGACGAGCAGCGCGTCCATAACGAAGTCGACGTTgtcgacgatgatgatgtcgATGACGAGGAGCGTGGGCAGCAGGATCAGGAGCGTCGCCTGCGCGAGGATTTCTTTCAGCAATTGTATCTAAAGAAGCATagcgcagcagcaactgttgctgctgcagctgctgccgccgccgccgctgctgctgcaacggtCAATGCCACCCCCACAGCGACGGCAACGCCGCTGCCCTCACCCATCAAACATGAGCCAGGCCAGGATCGTCAAGATCTGGCCGACATACAGAGCATACTGAACTTGACCAGCTGCACTTCGAGTTTCCTGCGCAACTTTGAGCAGAGTGTGAACACACCCTGCTCCAGCCAGTACAGCCTCGATGGACGCGATGCGGACGGCGAAGAGGCCCAGGATGCCTTCACCAGTGAATTCCGTCGCATGAAACTGCGCGGCGAATTCCCCTGCAAACTCTGCACCGCCGTCTTTCCCAATCTTCGTGCTCTCAAGGGTCACAATCGTGTCCATCTCGCTGCTGTTGGCGCCGCTGGGCCCTTCCGCTGCAACATGTGCCCGTATGCCGTCTGCGATAAGGCGGCGCTGGTGCGGCACATGCGCACCCACAACGGGGATCGGCCATACGAGTGCGCCGTCTGCAACTATGCCTTCACCACCAAGGCCAACTGTGAGCGGCATCTGCGCAATCGACATGGCAAGACCAGCAGGGAGGAGGTGAAACGTGCCATTGTATATCACCCGGCAGAGGATGCCAGCAGCAATTGTGAGGACAAGTGCAGCTCTAGGGAACTGGAGCTGGCCGAGCTGAGTCCACGTGCGCTGACACCGGAGCCAACCGTAGCGACAGCATCGCAGCTGAAGCACATGTTGCTGGCGGAGGCGGAGCCGCTGCCATTGCccgcacaacagcaacagttgccggTGTCAACGCCAGCGCTCAAGATACAAGTGAAGAGCCTGGATCAGTTGGTGGCCAAGCCGGcggagagcagcagcaatcagGTGCTTGATCTGAGCAAGAAAGCACACccacagcaccaccaacagcagcagcaacagcagccatcCCCACAGCCAtcgccacagcaacaacagcagcagcaacaacaacaacagcagcagcaacaacaacaacaactgccggcagcacagcagcagcaactgtttggagctggcgctgctgccacACAGTACATGCAGCAGCTGTTCCGTAATCTCATGTTCCAGTCGCAGCTGCCGCAGTTTCCCTGCTTCGGCTTtctgccaccgccgccgccgccctccaatgccacagcagcagcggcagcaaacgGCAGCGATGCCAacaatgcagcaacagctgctgctgctgctgcggctgctgctgctgctgcagcgttgCCGCTGTCGGTGCCACTGCCTGCCGCCGGACCCGTCAAGATGGTCATCAAGAACGGCGTGCTAATGCccaagcagaagcagcgtCGGTATCGCACCGAGCGACCCTTTGCCTGTGAGCACTGCTCCGCCCGCTTCACGCTCCGCAGCAACATGGAGCGTCACgtgaagcagcaacatccacagTTCTATGCGCAGCGTCAGCGACAGGGCCATCATGTGCTGCGTGGGCGTGCCGCCTCGGCGAatgcagcggctgcagcagccgcagcggcagcagcagcagcagcgctgtcacagcaacaacatcagcagcagcagcagcaacatgttgctgttgcgcccATATCGGAGCAGGTGAAGTACGCCATATTGGCGCAGCAGCTGAAGGCGCGCAAGGACACGGATCTGCTGCAGCAGGCACTGGCCCATGGCTCCATGCACttcagcaactacaacagcaacagtaacagcaacccCAAGCACGTCAGCAAcggactacaacaacagcaacaacagcaacagttgttggATGATGACGAGCCACCCAAGCTGATCATCGATGAGGATGACCAGGAACAGGATGTGGAGCTTGATGACGAGGAGCCGGAAGACGAAGACCTCGACGAAGACTATGAAGACGaagaggagcaacaacagcagcaacaacaacagcagcagcaacagcaacagttgtcgCCAccacagctgttgctgccgcgcAGCTCCACGCCCATCGAGCACAATGTGGGCGGCGAAAGCATGCTGGAGCAGGCCATCAAGGCGGGCAAACCACCAAGCCATCACGCCAGTCAGGATCTCGCTCAATCGCCGCCAGCGGCGACCAAGCTGCCAGCCACGCCTCTCATAACGCCCACGCCAATGAAGTCGCTGCTGGCACAGGCCGAGACCGTGGCCAAATCATTGAAGGAGGTCGCCAGTTCGCCATTCAAGGACGAATCGCAGGATCTGGTGCCGGTAGCCAAGCTGGTGGATAATGCCACCAGCAACCAGATGAGCGCCTTCAATAGCTACTTTCGCCCCAGCGATGTGGCCAATCACATGGAGCAGAGCGACGAGGAGGGCCTAGTCGCCTCCGGCAGCGCCAGCGAGAGCAACAACTCCGGCACCGAGGATgtgaccagcagcagcagtagctgcaaCGAGCCCAAAAAGAAATCCGCCTACAGCTTGGCACCGAATCGCGTCAGCTGCCCCTACTGCCAGCGCATGTTCCCCTGGAGCAGCTCCCTGCGTCGCCACATACTCACCCATACCGGGCAGAAGCCGTTCAAGTGCTCCCACTGCCCGCTGCTCTTCACCACGAAGAGCAACTGTGACCGCCATCTTTTGCGTAAACATGGCAACGTTGAGTCCGCCATGTCCGTCTATGTGCCCACCGAGGATGTAAGTGAGCCCATACCAGTGCCCAAATCCGTCGAAGAAATCGAGCTGGAGGAACAGCGCCGTCGCAAGGCTGAGAAGGAGCGTGAACGTGAGCGCCAGCGTGAACGGGAACGGGAACAGCAGCTagaacgtgaacgtgaacgtgaacggGAACGAGAACGCGAACGTGAACTGGAACGCCAGCGTCAACTCGAGCTGGAGCTGCAACTCGAGCGTgaacgccagcagcaacagcagcagcagcaacagctcataCAGCAGTTGGCCGCTGCAGCACaactggctgctgctgctacagctgGTAGCAACacggcagcaactgttgccggCGGGGGCGATTGTCTGGTCAGTGATCTGCCGTACAAGTGTCATCTGTGCGAGTTCAGCTGCGGGGAGCGGGCACAGTGCCTGGATCACATCAAGCAGCAGCATGCCCAGGAGTATGCGCTTCTGTTGGCCAAGGGGGCCATTGAAACGGAGGAGTCACAGGCAGCGGGTGCTGCAGTCGGTGCAGCAACCGTATCGGATGAGGAATGTCTTGGTGCCACACGCAACATGAACTCATCCGGTGGTGGCAAGTATCCGGACTATAGCAATCGCAAGGTCATCTGCGCTTTCTGCATGCGCCGCTTCTGGTCCACCGAGGATCTGCGTCGGCACATGCGTACCCATTCGGGTGAGCGACCATTCCAGTGCGACGTCTGCCTTAGGAAGTTCACGCTCAAGCACAGCATGCTGCGGCACATGAAGAAGCACAGTGGACGCGGCGAGACTGGTGGCCAGTCTGACTGCTCCGACGATGAGCAATCCGAcagcgccaacaacaacaacaacaacaacacttgccacaacaacaacaacaacagcagcaacaccaatagcAACTCGAAGCTGCAACTTCGCCTGCCACAGCTGCACGAGCTGCTTGACAAGGCCAACGAGTGGCGCGTCAATCGGCTGGGCGAGCACAAGGAGAACATTGCCGATGTAACAAGCAGCaccacaccagcaacaccggctgctgctgctgctgccgccgccgccgccgccgctgctgctgctgctgttgccggcAGCGATCTGATTGGCAACCTGCTGGGCATCAGTGACCAGGGTATACTCAACAAGCTGCTCTCCTCGGCGGATGAGGCGGCCAAGCTCCTCGGCGTGGATAAGTAA
Protein Sequence: MLAAQQQQQHNTAATSTAADVSSDLELRQRQRRDSSTSESSLEHLDLGRTPKKLSSSNGAPQPTSTPHETATTTSTSRKRKLRQQQHQQQQQLHSDEDGELQQQQQHQQHLEQQQSAQRVRHKQRRNANATASASIVVDYSASGDASSLRKKFRLNRSGVSTNGDLSESGFVDASVSVSSSSNNNNNNSSSSSNNNNNAAQSTQLQQQQHASSSSSGGSSPQAGLCMSSAESGIGAGDEHMKYLCPICDVISATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQQQSLGQQQQQPQQQSQSQRRQQQAAAATATPATAATAAAAAAATPATTARAESYESDASCSTDVSSRSSNSNSNSNSNSSENGSNMSHHNNNNNNSNCGNNNNNNEIEAAATMGKLKTINNNNIIAEKQQQQLLLDAVEQEIDSDSDSEQAQQITSTPDVATLLATSDADGDGDGDVDADAELEPEVHADGSNMLLLSCPACEADEFESLAALCQHLDAQHANIPAKCRDCEVIFASHRQLQAHSCRSANINNNSNNMLLPLHKVERMDDSDGDDEQRVHNEVDVVDDDDVDDEERGQQDQERRLREDFFQQLYLKKHSAAATVAAAAAAAAAAAAATVNATPTATATPLPSPIKHEPGQDRQDLADIQSILNLTSCTSSFLRNFEQSVNTPCSSQYSLDGRDADGEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRVHLAAVGAAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAIVYHPAEDASSNCEDKCSSRELELAELSPRALTPEPTVATASQLKHMLLAEAEPLPLPAQQQQLPVSTPALKIQVKSLDQLVAKPAESSSNQVLDLSKKAHPQHHQQQQQQQPSPQPSPQQQQQQQQQQQQQQQQQQLPAAQQQQLFGAGAAATQYMQQLFRNLMFQSQLPQFPCFGFLPPPPPPSNATAAAAANGSDANNAATAAAAAAAAAAAAALPLSVPLPAAGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRQGHHVLRGRAASANAAAAAAAAAAAAAALSQQQHQQQQQQHVAVAPISEQVKYAILAQQLKARKDTDLLQQALAHGSMHFSNYNSNSNSNPKHVSNGLQQQQQQQQLLDDDEPPKLIIDEDDQEQDVELDDEEPEDEDLDEDYEDEEEQQQQQQQQQQQQQQLSPPQLLLPRSSTPIEHNVGGESMLEQAIKAGKPPSHHASQDLAQSPPAATKLPATPLITPTPMKSLLAQAETVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQMSAFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSSCNEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRKAEKERERERQREREREQQLERERERERERERERELERQRQLELELQLERERQQQQQQQQQLIQQLAAAAQLAAAATAGSNTAATVAGGGDCLVSDLPYKCHLCEFSCGERAQCLDHIKQQHAQEYALLLAKGAIETEESQAAGAAVGAATVSDEECLGATRNMNSSGGGKYPDYSNRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCDVCLRKFTLKHSMLRHMKKHSGRGETGGQSDCSDDEQSDSANNNNNNNTCHNNNNNSSNTNSNSKLQLRLPQLHELLDKANEWRVNRLGEHKENIADVTSSTTPATPAAAAAAAAAAAAAAAAVAGSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -