Basic Information

Insect: Sphaerogastrella javana
Gene Symbol: Sry-delta_1
Assembly: GCA_037040025.1
Location: JBANCZ010014985.1:830-2068[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1e-05 0.0044 19.9 0.2 2 23 153 175 152 175 0.93

2 7 0.00016 0.069 16.2 0.1 1 23 181 203 181 203 0.97

3 7 3.6e-06 0.0016 21.4 1.7 2 23 210 231 209 231 0.98

4 7 5.3e-05 0.023 17.7 1.4 1 23 237 259 237 259 0.98

5 7 0.00024 0.1 15.6 2.2 3 23 268 288 266 288 0.96

6 7 1.3e-06 0.00055 22.8 3.8 1 23 295 317 295 317 0.98

7 7 0.0039 1.7 11.8 2.1 3 23 365 386 364 386 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1e-05	0.0044	19.9	0.2	2	23	153	175	152	175	0.93
2	7	0.00016	0.069	16.2	0.1	1	23	181	203	181	203	0.97
3	7	3.6e-06	0.0016	21.4	1.7	2	23	210	231	209	231	0.98
4	7	5.3e-05	0.023	17.7	1.4	1	23	237	259	237	259	0.98
5	7	0.00024	0.1	15.6	2.2	3	23	268	288	266	288	0.96
6	7	1.3e-06	0.00055	22.8	3.8	1	23	295	317	295	317	0.98
7	7	0.0039	1.7	11.8	2.1	3	23	365	386	364	386	0.94

Sequence Information

Coding Sequence: ATGAATACATGCTTCTTCTGCGGAGCCTCGGTGTCGCTGGTGCTGACACACCTGGCCAACTGCATGAAGACTGAGATGAATTTGAAATCGGATACCAAACTGTGTCCTCGGTGTTTCAATGAATTGGCCGACTATGATACAATAATGGTGAATCTGATGGTCACCCAGAAGAGGCTGACCACACAGCTGAGAGCGGCTCTAAAGTCGGAGTTTGAGGATGAATCACTGATCGAGGAGCTGGACAAATCGGCACAGGAGGATGCCGAGGCTGAGGCACTGTTTGTGGAGCTGGTCAAAGATGAGGATGAGATGGACATCAAGGAGGAGTTCGATGAGGAAGAGGACGATGAATTCGACGAGGATGATGAAGACTTTGTTGGCGACAACAAAGAGGAGGGCGTCGTTGGCAAACTGGACGATGAGGGCGGCAAATTCATTCCAAAACGCCTGAAGCAGGAGTGCCCCACCTGTGGCAAGATATTCAATGCACGCTATCAGCTGCAGAAGCACATCAGCGAAGAGCACAACAAGACGCCGGCTCACGTCTGTCCCATTTGCGGCATCATACGGCGCGACGAGGAGTACCTCGAGCTGCACATGAACGTGCACGAGGGCAAAACGGAGAAACAGTGCCGCTTCTGTCCCAAGAGCTTCTCCCGACCCGTCAATACCCTGCGACACATGCGCATGCACTGGGACAAAAAGAAGTACCAATGCGAAAAGTGCGGCCTGCGCTTCTCCCAGGACAATCTGCTGTACAATCACAGGTTACGGCACGAGGCCGAGGAAAACCCCATCATCTGCAGCATATGCAATGTGTCGTTCAAGTCACGCAAAACATTTAACCATCACACGCTCATCCACAAGGAGAACCGTCCCAGGCACTACTGCAACGTCTGCCCCAAATCCTTCACCGAACGCTATACACTCAAGATGCACATGAAGACGCACGACGGCGACGTCGTCTACGGCGTCCGCGAGGAGGTGCCCACGGACGATCAGGTGGTCGAGGAGCTGCAGGTGGATGTCGATGAATCCGAACAGGCCGTCACCGTCATCATGTCCGACAACGATGACAACTCCGCTGGATTCTGTCTCATATGCAGCACAAACTTTGAGAACAAAAAGGAGCTCGAGCACCACTTGCAATTCGATCACGATGTTGTCCTAAAGTAA
Protein Sequence: MNTCFFCGASVSLVLTHLANCMKTEMNLKSDTKLCPRCFNELADYDTIMVNLMVTQKRLTTQLRAALKSEFEDESLIEELDKSAQEDAEAEALFVELVKDEDEMDIKEEFDEEEDDEFDEDDEDFVGDNKEEGVVGKLDDEGGKFIPKRLKQECPTCGKIFNARYQLQKHISEEHNKTPAHVCPICGIIRRDEEYLELHMNVHEGKTEKQCRFCPKSFSRPVNTLRHMRMHWDKKKYQCEKCGLRFSQDNLLYNHRLRHEAEENPIICSICNVSFKSRKTFNHHTLIHKENRPRHYCNVCPKSFTERYTLKMHMKTHDGDVVYGVREEVPTDDQVVEELQVDVDESEQAVTVIMSDNDDNSAGFCLICSTNFENKKELEHHLQFDHDVVLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00508558;
90% Identity: -
80% Identity: -