Sjav001879.1
Basic Information
- Insect
- Sphaerogastrella javana
- Gene Symbol
- -
- Assembly
- GCA_037040025.1
- Location
- JBANCZ010000240.1:38340-44811[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.55 2.4e+02 5.0 0.5 7 21 656 670 656 675 0.92 2 14 0.051 22 8.3 0.3 1 23 1497 1520 1497 1520 0.94 3 14 8.8 3.8e+03 1.3 0.2 1 23 1691 1713 1691 1713 0.91 4 14 0.0002 0.085 15.9 2.7 2 23 1716 1737 1716 1737 0.97 5 14 7.6e-05 0.033 17.2 0.2 3 23 1745 1765 1743 1765 0.98 6 14 6.3e-07 0.00027 23.7 4.1 2 23 1772 1793 1771 1793 0.97 7 14 6 2.6e+03 1.8 0.4 5 23 1806 1824 1804 1824 0.96 8 14 1.5 6.4e+02 3.7 5.4 3 23 1831 1852 1829 1852 0.93 9 14 0.15 67 6.8 0.1 2 23 1863 1883 1862 1883 0.96 10 14 6.1e-05 0.026 17.5 0.4 1 19 1889 1907 1889 1911 0.95 11 14 1.7e-05 0.0075 19.2 0.5 1 23 1919 1941 1919 1941 0.98 12 14 0.00011 0.049 16.6 7.6 1 23 1947 1969 1947 1970 0.96 13 14 0.00032 0.14 15.2 5.0 1 23 1975 1997 1975 1997 0.98 14 14 0.031 14 9.0 8.2 1 23 2003 2025 2003 2026 0.95
Sequence Information
- Coding Sequence
- ATGGCGGACAGTATGCAGTGCCCCGTGTGCACCCTGTATCTGCATGCGGGCATGAATCTCTCCGATCATTTGGAGACACATCCCAAAGAGCAGGTGATCAAGGCATTGGTGCAAATGACAATCGTTGGCAACAGCAATGCTGTCGTTAGCAGCGCCCTGTCCTCAACTGCGATCCCCACTGCTGGCAGTGGTggtacagcagcaacaacaccagcagcaacaacaccagcagcagcagcaccagcaacagcagcaacaacaacaccaacagctgcATTAGCCACAGCAATtggtagcagtagcagcagcagcagcagtggagcgtcagcatcagcaacattaatcaatttatcgACTGACGATGATGTAAAACCAACTGTGGCAGCAATAGgaccaacaacagaaacagtagCAGCTTCACCAGCAGTCGCAatagcatcagcaacagcaacacctccaacagcagcagcaacaacaacaacaaacacaaaagcaacagccaaCAAAGCGGTGTTGTTGCTGGGAAACGCCAGTAGCAACAATgccagtagcaacagcagcagcagcagcaatagtagcagtagcacttacaataataataacaaattgaacaaTCCACCGATTAAAGCTATTAAAAGCGCGCCACCCTCGACTGAGGCGACAGCCACCACATCCAACACACCCACCATAAGCAGCGTGACTGCCGTGTATCCGCCAACATTGTCGACCGACTATCgctatcaacagcaacagcaacaacaacaggcgacagcaacggcaacggcaacaacaacagcaacatttcaCGGCTTTGCCCGTGGCGCAACGACAACCCTTGTGATACCACAGgcgccacaacagcaacagctgcagcagcaacatcatcaacagcagcaacatttccTGGCCAGCCAACAGCCGGCACACTTTACCCAGCAGCAGTCGGTCATGAAGTATACATATGCAACTGCGctaccaccgccaccgccgccccTTCAGctctttacgcagcagcagccggcgGCAGCGCAGTCACAGCACCAGAAGCCACCGCCCGCCTATGGAGCTGCCATCAGTCAAATTCGATCTCAGCACAACCAAAacaagcaacaccaacaccagcatcagcagcaacagcaacagcaactgcagcaacagcaacatcacctaAATGTGCAACATAATGTAACCCTAACACCACCGAGTGGCAAACATAGCAAAGCTCACACGGAGATCTTTCTAAatccaccgccgccaccaccaccgccgtctcagtctcagtcacaatcgcagtcgcagtcgcattCGCAGTCAATTCCACAGTCCACGTTGACGTCCAAGACAAGAATACAATctgcacaacagcaacagcaatcccaaatccaacagcaacagcaacaaacgcaTACCACCTATGCAACAGCAACCTGCAGCAGTACCACCTCAACGCTCCTAATATCAACGACATCGTCGGGCCGTGGTGCCAACAGTCGCCAGTCAACGAATTCACCATTTGGTGCGCTACTAAATGCAGCAGCACAAGCTGCCTGCGCCTCGCCAGCATCCTCCAATGGGGCCGCTTCTGTACTGCGTTATGCCGAATCACCAGTGGCTCACTATCTGGAGCGGGAGAATGGAGACTTTATAGTTCAAGAGACACCCAAGCATATTGTGGAATGCGTAGAGAAGGATGATGGTGAATTTTCCGTGATTGAACGCATTTATCATTCGCCGCCCAGTGTCCTGCACATActtgacgatgatgacgacgacgacgacgatgatgataataataatgaggaACAACGGGCGCGGCAAGAGCAAAGCTGGACAAACAGCGAGGAAGAGGGGCACATTAAGTTACCGCATAATCATGTGGAGGATGGCGACGATGAGCGCGAGGATAGCCGCAGTCGAGCTGGACTTAAAACATCTACGAAAAAGTTGCGTAAGTCCAAGACTGGCGGCAGGTCGTACAAACGTTCTTccaagctgcagcagcatcagcaacaacagcagcaacatcatccacTGGCAATGACAGAGGACGAGGATGACTTTATGAGCGTCGGCAGCAGTTGTGCGGAAAGTGAGCCGccaacagagcaacagcagccgagATCCTCCACTGCGATACACgcggcagcagcgacaacatcCTGTACATCTGATCTCTGCACGGCACCTTCAACTAGCAgtggagctgcagcagcggcagcatcatcaacatcatcatcatcagcagcagcagcatctgctgcTAGTGCGACCAGCTCTAGTAGTGGTAATGCAACGTCCAGCATCAAGTCCAAAAAGAATCGCGTTACGGTGCTCAGTGATGTGCCACTGAATATGAACGAGTATTTGGATCTGGTGGGCAACATTGTGGCCTCCAGTCGCATTGGAGCTTCGCGTGCGTTTGCCGCTGTCCCGTCCATACCATTTGTTAAAGTGGAAAAAGAGGATCCCTTGGATGACTATGAGAGCGTGCAGCCTGCCACATCTGCTGACCATGCTGCtggcaacagcatcagcagcagcagcagcaacagcagtagcaacagtagcagcgcCACCAATGGTCATGCCACAACCAGCGTCATACGCATGGCTACGACCAGCAATGGCAGTATCAGTGGCAGCGCCAACACAGCCACCCCAGAAGATCTCACACAGCCAACGGCAACAGCGATACTCACCGATTTCAAAGTGGAAGTGGAGGCAACGAAACTGATACCACAGCGTTTCTCAGCGCCAGCACAACAGCGTGGACCCAAGAAATTAGTGATTAAGCCAAAGGCCAcagtcacagcaacaacaacagcaacggcaacatcaTCTTCAGcgacaacggcaacggcaacagcaacagcaacaacgactaAAAAGACTGATACAAATGCtgccagtggcagcagcaatagttGCGTTGAATCTCTCAGCATATCAACAAAAGTTACAGCTATCGATCAGGTGCAAATCAAGAGCGAAATTGGCGAAGCCACATCAAACACTGGCAGCATACTGGAGAAGCATTTGACCAACAAATATGCTGCTgcctatgctgctgctgctgcaacatcctctctacagcaacaacagcatcagaaTCAGCAAGGGCGTAAACACTCGACcgttaatgatgatgatgcgcgTGTATTGCTTGAGTTTGCCAACTCCAATTCGAAGCAGCTGCCGCAGGCTGGCACAACATTTGTGGTAAATGCTGCCAGCTTTGCCTCAGCAGGTTCGGTGTTTGccagcggcagtggcagtggaACGGTGCAGAAGGTGCGACATCAGGATGAAGAGTATATTGTGCCTGATGATAATCTGGAAGTGGATGAAATTGTGatatcgtcgtcgtcttccTTTGCCTCCACCACTCGGCAGCCACAGCACTCACATCAGCAGCAGtcagcacaacagcaacaccagcaacaccaccaacatcaacagcagcagcagcagtcgcaggCCACGCTACAGCCAACTGGcttcaatgatttcaatttcctGTACCACCAAAACActgtgacagcagcagcagcagcatcatcatccacaacgacaacagccaACGCTTCCAATTTTGCACCATTCgggttgcagcagcagcaacagcaacacggcACAAATGATGCTACCAATGCAGCAACGCTTGCCTCATCCTCGAGCAACTCATCCGCATTGGAGCAGGATTGTTCCATGAACGCCAGCTTCCGTATGGCCAAGTCGCAGACTACGCTGGGTCCCTGGTATCAGgcgcaaccacagcaacaggcaCAGCCGCAGTCAAGCGGCAGCCAGAACGTGGAGCAATCGAATAATTTTATAGCTGCTCTGGCAGCCGTCGATTGTTCCAGTGTGGCTGTGGACAGTGATGCAAGTGATGCCAAATATTTAGATCTGGATACGTGTAAGCGTGAGCAATtgagcaatagcagcagccaTTTACcctcggcatcggcatccACATCCACCACATCTTCAtcgtttgctgctgccgccacgGAGAGCAGTCTGGTTGGTGGTTTGGGTCTCAATATACGCACCGATGAGAAGATGCCCGCCAAAGGTGAAATATCCGAGCAGGAGAGCAACTGCGACATTGAAAACTCTTGGAGTCAATCCATGTACGGAGACATATCACCGCGTTACTTTAGAAATCAGTTTACCGATGGCTACAATCATCAGATGGCCGATTGGCGTCAGGATTACTATCCCGCCCAGGATCTCAGTGGTCAGCCGCAACAGCATGAGCATAAACTCTTTGACTTCAATGCCGTCTCCTCGGAATATGCACAACAAGCTGCAGATTTGGGCGCTTCCTCAAGCACTGTACGCAGCAATCATTTGCTAGATGCCCAACCCACCACATCGTCATCGGCTTTGTTGTCTGGCTCACCCATAGCCTCGACATCGCGTGCTGCCGCCGAAGCGGAGGCCGCTGCCATGGCTCAACGGAAACCACCACGACGCAAGATTTACAAGTGTCCACATTGTGTGGTCATCTTTGAGAAGCTTAAGGAGCGCAATGCGCACATGATTGGCGAGCACAACTATGTGCGACAGAATCGTCGTTTGATCTGTACCCAGGCGCTGATCAGTGCAACGCTTCTGGGGCAGTCGCAAGAGCAACAACCAACGGACGCAGAGcagaatcaacaacaacaacaacagcagcaactcttGATGCAGGCAGGCAGCAGCCAAAGCGATGCATTGCATGAAGACTCCAAGGATGGCATTGTGAAAATCAAGCAAGAGAATTGCCAGGACAAGAATGATGGTGCTGACCAAATGCTGGACCATATTGGAATGCCCGATGTGAAGAACGCCGACTTGCTGGAGACAAACGGCAATCAGAATGCGCGCGAGACGGACATTAAGCCACCGACCAGTGAAACCGAACTGGATCAGAAACCAGCCATAACACCATTGGCACTGACAACGCCAGCTGCCAAATTGGCGGCAATCTATCGCATGCTTATTTCCTACAACGAATCCAAACTAAATCAGGGCGGCAATCTGAACGACCTAGAGAAGAAGGCCATGGAGAAGTCCATATTCCTGTGCTATGTCTGTCGTACAGATTTTCCATCGGTCAAACTCTACGATGCTCATCTCACTGAGCATCCGGCCGAATGTTTTACCTGCGGCAAGAAATTCTATCGCTGGAAGAACTTCTCGTTGCATTTGAAACGTCATCTGGGCTGGAAGGAGTTCGGCTGTTACGTGTGCGACAAGAAGTTCGTGGTGCGCAGTGCGCTAGTGGAGCACATGCGTATGCATACGGGACAGACACCATTGAAGTGCAAGATATGTGGCAAAAAATTCAAGCGCTACTCCAACTTGACGCAGCATCGCAAGCGCCACAACAAGATCAGTGTGCGAAAGAAGGAATACGTATGCCACTGTGGCGAGGTGTTGCCCTCCAAGGCGCGCTTCCTGTGGCACAAAGAGACGCACGACTTGAAGCCCAAATGCTGCCCATATTGCTGCGATCGTTTCGTGCATGCCAATTCATTGCGACGGCACATTCGTCTGGCGCATTCGGATAAATTCGATTATGCCGAACCCGTGGAGTGTCCCATGTGCAAGCAGATCTTTGCAAAGACATCGATCAAGGCGCACATGGCCACACATTCAACAGATCCGCAATACGATTGCGCCATCTGCAACAAGAGCTTCTCCACCAAATGGAATCTCAAGATACACTCATGGGTGCACGCGAATCGCACAGCCAAACCCTTCAAATGCGAATACTGTCCCAAGGCATTTGTACGTGAGCTGGACTTTAAGAATCACATGAATGCTCACAAACAGATCAAGCCCTATACGTGCGAATACTGTGGCTGCAAATTCATACGCAAGTACAACTACATGCGGCACAGGCGGGAGCATCATGGCAACAAGAAGTTCGTCTGTGATCAATGCGATAAATCCTTCCATCGGCATTACTATCTGATCGAGCATAAGCGCATTCACACCGGCGAGCGACCCTTCCACTGCACCATCTGTGGCAAGAGCTCCACCACGAAAACCAATCATAATAAGCATCTAAAGATACATCATTCGCGTGATCCCTTTACCGTCGAGGTCtaa
- Protein Sequence
- MADSMQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVGNSNAVVSSALSSTAIPTAGSGGTAATTPAATTPAAAAPATAATTTPTAALATAIGSSSSSSSSGASASATLINLSTDDDVKPTVAAIGPTTETVAASPAVAIASATATPPTAAATTTTNTKATANKAVLLLGNASSNNASSNSSSSSNSSSSTYNNNNKLNNPPIKAIKSAPPSTEATATTSNTPTISSVTAVYPPTLSTDYRYQQQQQQQQATATATATTTATFHGFARGATTTLVIPQAPQQQQLQQQHHQQQQHFLASQQPAHFTQQQSVMKYTYATALPPPPPPLQLFTQQQPAAAQSQHQKPPPAYGAAISQIRSQHNQNKQHQHQHQQQQQQQLQQQQHHLNVQHNVTLTPPSGKHSKAHTEIFLNPPPPPPPPSQSQSQSQSQSHSQSIPQSTLTSKTRIQSAQQQQQSQIQQQQQQTHTTYATATCSSTTSTLLISTTSSGRGANSRQSTNSPFGALLNAAAQAACASPASSNGAASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKDDGEFSVIERIYHSPPSVLHILDDDDDDDDDDDNNNEEQRARQEQSWTNSEEEGHIKLPHNHVEDGDDEREDSRSRAGLKTSTKKLRKSKTGGRSYKRSSKLQQHQQQQQQHHPLAMTEDEDDFMSVGSSCAESEPPTEQQQPRSSTAIHAAAATTSCTSDLCTAPSTSSGAAAAAASSTSSSSAAAASAASATSSSSGNATSSIKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGASRAFAAVPSIPFVKVEKEDPLDDYESVQPATSADHAAGNSISSSSSNSSSNSSSATNGHATTSVIRMATTSNGSISGSANTATPEDLTQPTATAILTDFKVEVEATKLIPQRFSAPAQQRGPKKLVIKPKATVTATTTATATSSSATTATATATATTTKKTDTNAASGSSNSCVESLSISTKVTAIDQVQIKSEIGEATSNTGSILEKHLTNKYAAAYAAAAATSSLQQQQHQNQQGRKHSTVNDDDARVLLEFANSNSKQLPQAGTTFVVNAASFASAGSVFASGSGSGTVQKVRHQDEEYIVPDDNLEVDEIVISSSSSFASTTRQPQHSHQQQSAQQQHQQHHQHQQQQQQSQATLQPTGFNDFNFLYHQNTVTAAAAASSSTTTTANASNFAPFGLQQQQQQHGTNDATNAATLASSSSNSSALEQDCSMNASFRMAKSQTTLGPWYQAQPQQQAQPQSSGSQNVEQSNNFIAALAAVDCSSVAVDSDASDAKYLDLDTCKREQLSNSSSHLPSASASTSTTSSSFAAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDISPRYFRNQFTDGYNHQMADWRQDYYPAQDLSGQPQQHEHKLFDFNAVSSEYAQQAADLGASSSTVRSNHLLDAQPTTSSSALLSGSPIASTSRAAAEAEAAAMAQRKPPRRKIYKCPHCVVIFEKLKERNAHMIGEHNYVRQNRRLICTQALISATLLGQSQEQQPTDAEQNQQQQQQQQLLMQAGSSQSDALHEDSKDGIVKIKQENCQDKNDGADQMLDHIGMPDVKNADLLETNGNQNARETDIKPPTSETELDQKPAITPLALTTPAAKLAAIYRMLISYNESKLNQGGNLNDLEKKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHNKISVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPVECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFVCDQCDKSFHRHYYLIEHKRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -