Sjav013503.2
Basic Information
- Insect
- Sphaerogastrella javana
- Gene Symbol
- -
- Assembly
- GCA_037040025.1
- Location
- JBANCZ010007018.1:1-5410[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00022 0.097 15.7 3.4 1 23 291 313 291 313 0.98 2 11 0.0011 0.47 13.5 10.5 1 23 320 342 320 342 0.96 3 11 0.00011 0.048 16.7 6.5 1 23 348 370 348 370 0.98 4 11 0.00034 0.14 15.2 2.3 1 23 376 398 376 398 0.95 5 11 2.4e-05 0.01 18.8 0.5 1 23 404 426 404 426 0.97 6 11 1.6e-05 0.0069 19.3 0.1 1 23 432 454 432 454 0.98 7 11 0.00014 0.058 16.4 2.0 1 23 459 482 459 482 0.97 8 11 0.057 24 8.2 0.3 1 23 488 511 488 511 0.94 9 11 0.00018 0.078 16.0 0.1 1 23 572 594 572 594 0.98 10 11 0.017 7.1 9.8 2.7 1 23 707 729 707 729 0.95 11 11 0.0048 2.1 11.5 4.9 5 23 742 760 734 760 0.92
Sequence Information
- Coding Sequence
- ATGCCCTATCTGTTATCCACGGATGGATCATTGGCCGTACAAAAGGATGTTAAAGGTGCACTTGCCGGCAATAAGAGCAATGTCCTCCGACGCATGTTCGTGGTGAACGATTCCTCATTTGCGCCCGGAACACAAAGAGTAATTACCACAAGCGCCGCATCGACGGTGGTCAAAAAACAGGACTCTGGTCAACAGGTGTTGAGCATTAATTCGCTCGATAAGAACTATGTATTAGTTGATCCGGCgacagccgcagcagctgcagcacttGGAGGAGTTGGTGGCATTAGTGTTGCCGATGCCGTtgcgcatcatcatcatctgcaacaacagcaacagcagcagcaggagcaacagcatcaacaagaaaaccagcaacatcatcataaccataatcataatcatagtcatcatcatcatcagcagcagcagcaggagcaacaggagcatgagcagcagcataatgctgatgctgccaaAACAGGACAAACAGCGATATTTAacgctgcaacagcagcagcagcggcagcggccaAGTCGCATTTAAGCTCAATTGAAGCGCTGCATCTGACGCAACAGCAATGCAATGAGATCTTAATAAAGCatcacgaacaacaacaacagctacaccgacaacaacaacaacaacaacatgacaCATTACACGCATCATCATCAAGTGACTTACTTCCTGGTATTTCAGTTCAAGTACAGAAAGTAATACAAGGACTCGAAGAGAACGAGGACTCGCAGGGCGACGCACCCAACTTAAAGTTGGAGCCAGGCACATTAGAATTGTCCCCAAAGACCGAACTACAGGAATCAATGCATTTCAGCGAAACCGACGCCACCATCAAGAAGGAGCGCCCGTACAGTTGTGACGAGTGCGGTAAATCCTTTCTGCTCAAACATCATTTGACAACACACGCACGCGTGCACACAGGTGGCGAACGTCCACACATCTGCACCCATTGCGGCAAGAGTTTTGCGCACAAACATTGCCTAAATACAcatctgctgttgcattcAACGGATCGTCCATATCAGTGTCAGGAGTGCAAGAAAAGTTTCACCCTCAAGCATCATCTGTTGACCCATTCGCGTGTCCACAGCCGTGAGCGGCCCTTCGTTTGCCAGGAGTGCGGTCGTTCTTTTCCATTGAAGCGTCATCTGGTGACGCATAGTAAATTTCACGCCGGCGAACGACCCTATGTGTGTGAAGAATGCGGAGAGAGTTTTGCCCAGGAGAATCACCTGATTATGCACTCGCGTTTTCATGGTTCATTGAATCCATTTGTCTGTGCTGATTGCGGCGCCTCGTTTCCACgtaaatttcaattggttAATCACGGACGTATACACGGCAAGATACCACACTCCTGCACCGTTTGTGGCAaagaatttttacaaaaacgCACGCTAGTTTCCCACATGAGgCGCGTACATACCGGCGAGCAGGCGCATCCCTGCGTTAGCTGCGGCGAGGGTTTCCTCACCAAGGCGGAGCTGCATCAGCATGTGCGTGCAGCCCACAATGGCGTCAATCCCAATACAAGCAGCGCCACAATTATAGCCAATCAACAGttcCATCAGATACAACAGCCCCATCATCATCCCGGACATCCGCAAACCATAACCGTTGTGAGCAATCCAGCCAATTCGACGCTGCTTACCGTCTCCACAACCGATGCGAACGGTGTTGCGCGTCCGCAGTTTGTTTGCCGCGAATGCGGCAGCGCGTTCAATAGCCGCGAAGCGCTCGCCCTGCACTTGCGACTGCATACGGGCGACAAGAGCCTTATGACCGATCTGTGTGCGCTCACTGCGGCGCTGCCTGGTCACTTCTTGAGCACGGCCAGCCTAAATCCGGGCACTGTAGTCACGGCCAATCCGAATCTGGTGGCACAGAGTCCGGTGCCCGTGCAGATCATATCGTCCACCGGACAGGTGATGTCACAGACAACACTGGTGCAGGCGGCAAATTCGACGCATCCACAGGCTGTGGTGACGGCGGTGCCATCGATGCCGGTGCATGGTCAGCATCTGCAGCATGtatcgcaacagcagcagcaacagcagcatgtgGTGACTGTATCGCCGGCGAATAAGCCAAAATCGCATTTCTGTGCCAGCTGTGGCAAGGGTTTCGCTGCCAAGCATGGCCTAATGCAGCACAATCGTCGCCATCCGAATGGTGGCTGCACGGTGCGCACccatgtgtgcgagtgtggcAAGGCCTTCTTCCAAAAGAATCATCTGATGCTGCATCAGCGACAGCATTTGGAAACGAAGCCGGCCATATCGCAGCAACAGGTATGCTAG
- Protein Sequence
- MPYLLSTDGSLAVQKDVKGALAGNKSNVLRRMFVVNDSSFAPGTQRVITTSAASTVVKKQDSGQQVLSINSLDKNYVLVDPATAAAAAALGGVGGISVADAVAHHHHLQQQQQQQQEQQHQQENQQHHHNHNHNHSHHHHQQQQQEQQEHEQQHNADAAKTGQTAIFNAATAAAAAAAKSHLSSIEALHLTQQQCNEILIKHHEQQQQLHRQQQQQQHDTLHASSSSDLLPGISVQVQKVIQGLEENEDSQGDAPNLKLEPGTLELSPKTELQESMHFSETDATIKKERPYSCDECGKSFLLKHHLTTHARVHTGGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCQECKKSFTLKHHLLTHSRVHSRERPFVCQECGRSFPLKRHLVTHSKFHAGERPYVCEECGESFAQENHLIMHSRFHGSLNPFVCADCGASFPRKFQLVNHGRIHGKIPHSCTVCGKEFLQKRTLVSHMRRVHTGEQAHPCVSCGEGFLTKAELHQHVRAAHNGVNPNTSSATIIANQQFHQIQQPHHHPGHPQTITVVSNPANSTLLTVSTTDANGVARPQFVCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPGHFLSTASLNPGTVVTANPNLVAQSPVPVQIISSTGQVMSQTTLVQAANSTHPQAVVTAVPSMPVHGQHLQHVSQQQQQQQHVVTVSPANKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPAISQQQVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01556276;
- 90% Identity
- -
- 80% Identity
- -