Sjav016043.2
Basic Information
- Insect
- Sphaerogastrella javana
- Gene Symbol
- -
- Assembly
- GCA_037040025.1
- Location
- JBANCZ010009680.1:1063-3878[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0082 3.5 10.8 0.3 2 23 24 45 23 45 0.96 2 14 0.01 4.4 10.5 3.0 1 23 51 74 51 74 0.96 3 14 0.076 33 7.8 0.2 1 23 77 103 77 103 0.93 4 14 0.0013 0.57 13.3 0.1 2 23 120 141 119 141 0.88 5 14 0.00057 0.25 14.4 2.8 2 23 148 169 147 169 0.97 6 14 0.26 1.1e+02 6.1 2.1 2 23 444 466 443 466 0.95 7 14 0.066 29 7.9 0.6 1 23 491 513 491 513 0.97 8 14 0.13 57 7.0 3.4 1 23 521 545 521 545 0.90 9 14 0.11 48 7.2 2.2 2 23 550 572 549 572 0.95 10 14 0.00032 0.14 15.2 0.2 2 21 585 604 584 605 0.93 11 14 0.0036 1.5 11.9 0.3 1 23 613 635 613 635 0.98 12 14 1e-06 0.00044 23.1 2.8 1 23 641 664 641 664 0.98 13 14 4e-05 0.017 18.1 1.4 1 23 670 692 670 692 0.98 14 14 0.00037 0.16 15.0 2.9 1 23 698 720 698 720 0.95
Sequence Information
- Coding Sequence
- ATGGCTCAATCCGCTGGCGGAAGTCAAAAAATGTTAGTGGAAATAACAACAGACGGCATTCCAAAGCTTCACTGTCCTGTTTGCAACAAGGCCCTGGTTTCCCTTGCCGGCTATGTGAAGCATGTAAAGAAACACGAGCCGCCGGGCGGATTTCAATGCCGCTACTGCGATGCCCAATACTGCCACGATGAGGAACTAAAGGAGCACATTAAGGCCAATCACGCCTCCTTCAGTTGCACGATGTGCAAAAGCACTGATGCCAGTTTCAATAACAAAGCAGAGCTTGATGCGCACATGGAGGAGACGCATCAGGATCGCAAATTTAATGTTTGCCTGGATGCTAGCCCAAAGTCTCTCAAGTGTGAGATTTGCGGCAAATCTTTCGCAGATCGCGAAAGTAGTCTGGCACATCAAGTCGAGCATGAGGCTGAGCTGCCTGTACCATGCTCTGGTTGTGCAAAGCGTTTTTCCTGCCAGTCCAGTCTGATGAAGCATCAACGGAAGCATCCGGATAGTTGCGGCCGTTTCAATTCCAAGCGCACAACTGCCCCTACAGTTTCGCTATCTGTTGGGGCTGCTAAAAAGAAACGCGGTAGACCGAAGAAGGTAGTCGTAGCTGCTTCGTCAGAGGATGAAGATGAGGATGAAGATGATATTCCATTGGCAAGCAGAGTAAAAGTGGTACTGAAACAGGAAACGTCTAGTAATCATCCATTAAGCGACTCTGGTGAGGAGTATCCAGACTTTGAGCCCAATAACAGCGATGACGAGCCAGACGCGCAACGGTTTAAGTTAccgacaccagcagcagtcAAGGTGGAGGCTGTCGATCCTGATTTTGAGTACCAAGATGCGAGTCTTTATGTCAAGGAGGAAGGGCACGCTCCAGATATTTACATCAATGAAAAAGATAAACTATTAGATGTACTGCTAAGTACGAATGAGAGTCTAAAGCCATTTGAGAATCTCAAGGTAGAACATGCAACTGGGATATTGGATGAAATCGCTGCAGTGCCGATGGCCAAGTCTAATAGTTCTGAGCATATGGAAGAGGATGTTTTAGCATTACGGGAAACAGAACCAGATactgatgaagatgatgatgaagacgtCGACGaggatgatgaggatgatgattaTGACGATGACGAAGATTACAAGGCGGCCAAGCAGAAACGTATAAAATCCACTGGCAAACGAAAATATCGCAAGCGCGGAACAGGAAAGTCATCACCTACGTCAGATCAAGCAGCTAAACGTGTCGCGAAAATCTCTAAAAAAGAGCTCAAGGAGCGTTTGAAGATGCTtaacaaaatggaaaagagcTGGAAGTGTCCACATTGCGTTAAAATCTATCACATTCGTAAACCTTATGAGAAACACTTACGGCTCGATCACAAGCTCAGCGAGCAGGATATAAAAGACATTTTCAAGGATGTTGATGGGCATGTGAAGCTGGATGAAGAAGTGTTTAAATGCCAGATCTGCAGTAAGATCTACTTGGTCGAAAAGCGACTAGAGACGCACATGAAGGCCCACGGAAAAGATGGAAGCTTAACATTTAAGTGCCCCTGCTATTGCAATCTGTTCTTTGCCACCAAAGAGCTGGCCACGCAACATGCGCACGAACAGCACAAGGAGCTGCTCTACTGTGAGAAGTGCGACAAGTATATGACTGGACACGACAGTCTCAAGAATCACGAGCGAAATTACCATGCCAAGAAGGAGCCCAGGAATCTGACACGTAATCTCATATGCGACAAATGTGGCAAAAAGTTCAGTGGACGAACCTCCCTTTCTGACCATGTGCGCTCTCAGTGTGGTCGTGTGCCGCTCTACGAGTGCACTGTATGCCGCAAGCGTTTATCCACGGCGGGTATTCTTAAGACGCACATGTTGCTGCATCAAGCAGATACACCATATCAGTGCGATAAATGTGGCAAGACCTTCAAAGTGAAGGCACAATACAAGTCGCATCTGAAGACCCGTCATACGGATTACAAACCCTACAAGTGCCATcTCTGCCCCAAGGAATATCCCTATCGTGAAAGCCTACTCACCCACATGACTGTACATACGGGCATCAAACGTTTCCTATGTAATAATTGCGGCAAACGCTTCACTTGCATCTCAAATTTGCAAGCCCATCGGAAGGTGCATGCCGATACCTGTGGCCAGCTGCCGCTAAATGCCAAGGCAACACAATATATGGGAGTGCAACGGGGCAAACTGTTGATGGGAGCCAAGCCAGAGGCAGGCATGGAATATGAGGAGACTAAAACATTGATTGCACAAGATGTTATCGACCGAGATATGCCCATGGCACAAGAGCTGAATTTCCCATCCGATGGTATTGCACCATTGGCAACAGTGCCACTAAACTATGCTTCAACGCATCTTGTGCCACATATTGTGCTGCAGACCATGCAGGCCGAGGCCCAGAGAGCACAGCACTAG
- Protein Sequence
- MAQSAGGSQKMLVEITTDGIPKLHCPVCNKALVSLAGYVKHVKKHEPPGGFQCRYCDAQYCHDEELKEHIKANHASFSCTMCKSTDASFNNKAELDAHMEETHQDRKFNVCLDASPKSLKCEICGKSFADRESSLAHQVEHEAELPVPCSGCAKRFSCQSSLMKHQRKHPDSCGRFNSKRTTAPTVSLSVGAAKKKRGRPKKVVVAASSEDEDEDEDDIPLASRVKVVLKQETSSNHPLSDSGEEYPDFEPNNSDDEPDAQRFKLPTPAAVKVEAVDPDFEYQDASLYVKEEGHAPDIYINEKDKLLDVLLSTNESLKPFENLKVEHATGILDEIAAVPMAKSNSSEHMEEDVLALRETEPDTDEDDDEDVDEDDEDDDYDDDEDYKAAKQKRIKSTGKRKYRKRGTGKSSPTSDQAAKRVAKISKKELKERLKMLNKMEKSWKCPHCVKIYHIRKPYEKHLRLDHKLSEQDIKDIFKDVDGHVKLDEEVFKCQICSKIYLVEKRLETHMKAHGKDGSLTFKCPCYCNLFFATKELATQHAHEQHKELLYCEKCDKYMTGHDSLKNHERNYHAKKEPRNLTRNLICDKCGKKFSGRTSLSDHVRSQCGRVPLYECTVCRKRLSTAGILKTHMLLHQADTPYQCDKCGKTFKVKAQYKSHLKTRHTDYKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQRGKLLMGAKPEAGMEYEETKTLIAQDVIDRDMPMAQELNFPSDGIAPLATVPLNYASTHLVPHIVLQTMQAEAQRAQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00832341;
- 90% Identity
- -
- 80% Identity
- -