Sjav012513.1
Basic Information
- Insect
- Sphaerogastrella javana
- Gene Symbol
- -
- Assembly
- GCA_037040025.1
- Location
- JBANCZ010006165.1:2441-5606[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.8e-05 0.0078 19.2 5.1 1 23 175 198 175 198 0.97 2 16 0.00081 0.35 14.0 2.7 1 23 243 266 243 266 0.97 3 16 0.0048 2.1 11.5 3.1 1 23 332 355 332 355 0.96 4 16 0.0027 1.2 12.3 0.5 3 23 407 427 405 427 0.96 5 16 0.78 3.4e+02 4.6 0.6 1 20 540 559 540 561 0.80 6 16 0.038 16 8.7 1.0 1 23 570 592 570 592 0.94 7 16 0.00012 0.053 16.5 1.8 1 23 599 621 599 622 0.95 8 16 0.00042 0.18 14.9 1.1 2 23 630 651 629 651 0.96 9 16 0.0015 0.67 13.1 0.3 2 22 678 698 677 701 0.89 10 16 0.0059 2.6 11.2 1.4 1 23 736 759 736 759 0.96 11 16 8.2 3.5e+03 1.4 0.4 1 21 766 786 766 787 0.92 12 16 0.022 9.5 9.4 0.3 1 23 796 819 796 819 0.95 13 16 1.6e-05 0.007 19.3 0.5 1 23 838 861 838 861 0.97 14 16 0.82 3.5e+02 4.5 0.1 1 23 871 893 871 893 0.91 15 16 0.0001 0.044 16.8 3.2 1 23 899 921 899 921 0.98 16 16 2.7e-05 0.012 18.6 1.4 1 23 927 949 927 949 0.98
Sequence Information
- Coding Sequence
- ATGACACGAACTTGTCGGATCTGCGGTGGAGCAGATGGACGTTTTTGGATTGAAACACCAATTGATAAATATGCAGAGAAAACGTTCAATCAACTATTATTGGAGCTTACCAGACTGGAGGTCGCTTTGAATCAAGCTGACAAACTTCCGCCATGGCTCTGTGTCAGCTGCGCTACTAGGCTCCAGAATGCTTacgattttgttttgcaggCCCGTGAAACTCATCAGCTGTGGCTCCAGAGGCTGACGGCCAATTCCGTCTCGGAGGACAACGAAACAGGCACTTTGGCATGCCTGCGTGAGATGCCCATACAATTGTTGGATATAGAAGGAGTCACAATTAAAATGGAAGAGACAACTGAGCCTGTTGTGCCGCAACAGGACCCAGGGAGTTCAATTGATCCGCTCATAAAGCGTAACGCTGCTGATGATCCTAGTCCCAATgaagacgatgatgatgatgatgtgccGTTGAAGCAACGCAAGGAGAAAATCTTAAAGCTACCCATGCTGTACAAGTTACACAAGTGCAGTAAATGCCCGAAGACCTTTAGATACATTTCCAATCTGTTTCGGCACAGGCAGCGAGATCATGATCATGATGACACGAGTAGTCGTGCAGCGACTCGTTCTAAACCAGCGCAATTATTGCATGATGTTATAAAGACTACCCTTGCTGCACGTGATAGCAGCAATTCAGAtgcggatgatgacgacgacaactACTACAAGTGCGATCAATGCGATAAATCGTACAAATACATAATGATGCTTCTcaagcataaacaaaaaacgcatGGCTTCAACCAGTTGTCGGTGGATCCTAGATCAAACAGCAGGAGCTCTTCGACCATCAACCAATCATCTGGACCCAGAGCAGCTCAACATGCACGACCCAGAGCTCCTTGCACAGATTCATTGGTTCATAGTGTAATAAAAGATCTCAAAACACCTGAGGATGACGAAGCAGACAACACTGGCTCAGACAATTATTACAAGTGTGATCAGTGTGAACGATCCTACAAGTATATTGTAAGcttaattaaacacaaacacaaagagcATAATGAGTATAATGAATCAGACAACGATGAATCCAACTCAGCCCAGAATGCAACCGCTGCAACGTCTACTAATCCAAAACCTGTGCGCATTGATCGACGTGTCACGGACTTTGACTTGAATCGTTGCAAGCCAAATGGTTCTAAAGAGATTATATGCATGATTTGTCTGCGTCGATTTGTTAAACTGCGCGAGCTTCGTGATCATCTCAAAACGCATCCGAAAGACTTTACATTTGAGGCTCATGGCGAGCCTATTGAGCGCATAGCCGAAGGCTTCTTTAAGACGGCTGTAGAGTCGACGGCTGAGGGACTAAAAAAACGTATTTTCAATGATCTCAAACTGGGCTTCTATGGCCGGTATTATTCTATAACAAACGAGGCGCGCTATGAGATGAACCTGGATAGTTCAGATACAGACAGCGATGGCGAAGCGGATGTGGTGGAACGGCGCAGCTATGCCTGTGAGCTTTGTGCTGAACCAAACGCTGTTTGGCCACGTAAATTTCAGCTGCACGAACATCATCGACAGTGTCACACTTGGTTAGAAGCGCCCTACGTTTGTCAGCGCTGTGATGCTCGTTTTCTGAGCACACAGCTACTGGAGCATCATACGCTAAAGCTCTGCCAGAATACATTAAAGCGCTTCATGTGCGACAAGTGCCCACAGCGTTTCTTCTGGCGGCGCAATCTGCGTAGCCACCTTGTGGAGCACAAGAACAAGCAAGATAATTATCCGTGTGACGAATGCACGCGCAGTTTTCAGGATAAGAGCGCTGTGACAAAGCACAAGCTAATGCATCATGACGTGAGCACCCAGCTTATTCCCTGTCGCTGGTGCACACGAACGTTTTATCGACCAGCTCTGCTGCACAAGCATGTACAGCGTCATGGTTTTACGGGAGAGGATCTACCCCTGGCGGAAACACTGCTGGCAGATGCCGCCAAACTATCCGGCTCCAAGACAATCATGTGCAAACTATGCGATATGCACTTTATTAGCATTGGCGACCTACGACGACACATTTCTATGCAGGCGCATAGCGAGGTGGCCTCCAATTACATGATAAGTACGGAGGAAGGTTTCGAGCTGCAGCTGGATGACACGGATGATAGCGACGATGAGACTGCTACAGGCAGAAACTACAAATGTGATCTCTGCGAAATGACCTTCCAGCGACGGCGAGAAATGAGCGAACATCAGTATTCACTGCACACTTTTGACAAGTTGCCGCACAGCTGTGATCAGTGTATCTACAAGAGTGTTGACAGGAACATGTTGGAGCAACATAAACGCGCACAATGCCAGAACGAAGAGAAGAAATTTAGTTGTTCGCGCTGTGGCTACAAGTTCATGTGGCCCGAAAACCTGGACCAGCACATGGTCAGTCAGCATTCAAAGTCATCAAATCAATCACCTGTTCCGGTCAAGCGCAGTAGACGCTTTAGATACCAGTGTCCTCATTGCTGGCGCTCCTTTGTAGTGCAGCCCAGCCTGGACAAACACATACGTGATATGCATGTGGCCAAAAAGAATCCTGGCAAGAAATATCTGTGCTCCCTTTGTGGCCTCGAGGCGCTCACGCCCAACAAGCTAAGCATTCACATGCAACGTCACAATGGCGAAAAGCCACACAAATGCGATCTCTGCGACATGTCATTCACTGTGTTCTACGAACTCAAAGTGCATCGTCGCAAACATACGGGCGAGCGTCCGTATCAGTGCACCTTCTGTGCAAAGGACTTTTCCAGGCCGGACAAGTTGAGGCGACATGTCTACATGCACAGCGTTAAACGTTAA
- Protein Sequence
- MTRTCRICGGADGRFWIETPIDKYAEKTFNQLLLELTRLEVALNQADKLPPWLCVSCATRLQNAYDFVLQARETHQLWLQRLTANSVSEDNETGTLACLREMPIQLLDIEGVTIKMEETTEPVVPQQDPGSSIDPLIKRNAADDPSPNEDDDDDDVPLKQRKEKILKLPMLYKLHKCSKCPKTFRYISNLFRHRQRDHDHDDTSSRAATRSKPAQLLHDVIKTTLAARDSSNSDADDDDDNYYKCDQCDKSYKYIMMLLKHKQKTHGFNQLSVDPRSNSRSSSTINQSSGPRAAQHARPRAPCTDSLVHSVIKDLKTPEDDEADNTGSDNYYKCDQCERSYKYIVSLIKHKHKEHNEYNESDNDESNSAQNATAATSTNPKPVRIDRRVTDFDLNRCKPNGSKEIICMICLRRFVKLRELRDHLKTHPKDFTFEAHGEPIERIAEGFFKTAVESTAEGLKKRIFNDLKLGFYGRYYSITNEARYEMNLDSSDTDSDGEADVVERRSYACELCAEPNAVWPRKFQLHEHHRQCHTWLEAPYVCQRCDARFLSTQLLEHHTLKLCQNTLKRFMCDKCPQRFFWRRNLRSHLVEHKNKQDNYPCDECTRSFQDKSAVTKHKLMHHDVSTQLIPCRWCTRTFYRPALLHKHVQRHGFTGEDLPLAETLLADAAKLSGSKTIMCKLCDMHFISIGDLRRHISMQAHSEVASNYMISTEEGFELQLDDTDDSDDETATGRNYKCDLCEMTFQRRREMSEHQYSLHTFDKLPHSCDQCIYKSVDRNMLEQHKRAQCQNEEKKFSCSRCGYKFMWPENLDQHMVSQHSKSSNQSPVPVKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLEALTPNKLSIHMQRHNGEKPHKCDLCDMSFTVFYELKVHRRKHTGERPYQCTFCAKDFSRPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -