Sjav012397.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sphaerogastrella javana
Gene Symbol
Kr-h1
Assembly
GCA_037040025.1
Location
JBANCZ010006062.1:1281-5564[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0045 1.9 11.6 3.0 1 23 208 230 208 230 0.98
2 8 1.9e-06 0.00083 22.2 1.5 1 23 289 311 289 311 0.99
3 8 2.3e-05 0.0099 18.8 2.3 1 23 317 339 317 339 0.98
4 8 5e-07 0.00021 24.1 2.8 1 23 345 367 345 367 0.99
5 8 3.7e-07 0.00016 24.5 1.3 1 23 373 395 373 395 0.98
6 8 0.00013 0.055 16.5 1.4 1 23 401 425 401 425 0.99
7 8 0.65 2.8e+02 4.8 3.7 1 23 431 453 431 453 0.94
8 8 1e-06 0.00043 23.1 0.6 1 23 459 481 459 481 0.98

Sequence Information

Coding Sequence
ATGACTGAACACCAGAATGGCAAAAAGTCTTGGGGAGCCAAGCAAAATTGGATTAAGGATGCGCTTAACAAATCCGGCACGGAACTGGTGGAAGTCACCAAGACTAAGGCTAAGGCgacgcaaaagaaaatgccagCTAAAGATTCAGCCACAACCAACATGGTCTATTATCCTGCTAATCAGCTGCTTATAAAGACGGAGCAACCCAGTCAGGCACAGTTCTGTCTGCAGGGTCCTCTGGCAGCGACGAGTAGTGTTGGCATTGGTTCTGCGCCACCTAGCGGTCAGCATGAGCACTACGAGCTGTTACAGACGCCACAGCAGCGACAgttgcagctacaacaacagcagcaacagcagcaacaacaacagcaacatcttgccaattatcaaataaacttgcaacagcaacaacaacaacaacaacaacacaatagtattacaacaacaacaacaacaacatcaacttcGGCACAGCAACGCATTAAAACAGAAACCtatgcagcaccagcagcaactgttggtgGCGTCACAACAAAAGCTGTCgttgcagcagccacaacaacaacaacaccaacagcaacagcaacaacaaggaaaCCCAATGGCAATAAGCCGCAATTCAAGTGCGAACAGTGCGGCATGACCTTTGGCAGTAAATCGGCTCACACCTCGCACACGAAATCGCATGCCAAGAATGCGGACATGGCACTGGGTATACAGGGTggcggcagcagtagcagtatcAGCACCAGCTCATCCTCTAGCGGTGCTATTGAACTGAATGAGGCCGGACTGCCGTTGGGTATACCAAAGAGTCCCACCATCAAGCCGCTGGCCAATGTGGCAGCCGGAGCGGATCCGTATCAGTGCAATGTGTGCCACAAGACATTCGCGGTGCCCGCGCGACTGATCCGTCATTATCGCACGCATACAGGGGAGCGTCCTTTCGAGTGCGAGTTCTGTCACAAGTTGTTTAGCGTGAAGGAGAACCTGCAGGTGCATCGACGCATCCATACCAAGGAGCGACCGTACAAGTGTGATGTGTGCGGGCGTGCCTTTGAGCATTCCGGCAAACTGCATCGTCACATGCGCATCCATACGGGCGAACGGCCGCACAAGTGTTCCGTCTGTGAGAAGACCTTCATACAGTCCGGCCAACTGGTCATCCATATGCGCACACACACCGGCGAGAAGCCATACAAATGCCCGGAGCCGGGTTGCGGCAAGGGTTTCACCTGCTCCAAACAGCTCAAGGTGCACTCGCGCACGCACACCGGCGAGAAGCCCTACCACTGTGACATCTGCTTCCGGGACTTTGGCTACAATCATGTGCTGAAGCTGCATCGCGTGCAGCACTATGGGGCCAAGTGCTACAAGTGCACCATCTGCGATGAGACCTTCAAGAACAAGAAGGAGATGGAGGCGCACATCAAGGGTCATGCCAATCAGTTGCCCGAAGACGAAGtggaggcagcagcagccgcagccttGGCCGCCGCAAGCGGTTCGTCCTCGTCCATAGCCAGCAATTCggagagcagcaacaattcgCCTCCAAGCTCGCCGCCAGCCACCAAGAAGCCACGTCAAGCACGTGGCGCCaaagcagcggcggcggcggcagcagcagcagcagcagcagcagtggtagtagctgcagcaacagatCCACTCTCACCTTGTTCTGTTAGTTCCACGTATTCGCCTGCCAGCAGCAACCATGCCTCGCCACCGCCGCAATATATGGTGACGCACGCGCAGGCTGAGCCGGATGCCTTGAGTAGGGACAGTGGGGTATCCAGTGCGCAGACTGTGCATGCCAGCTATGTGGATGAGGAGCTGCCCACGGATTTGAGcatgcaacagccacaaccGCAGCCACAAATTATCtactaccaacaacaacaacaacaacaacagcagcagcagcagcagcagcaacaatcaacaGTGCCGCCAGTAAGTCTGGTGGAGCTGCAGCCACAGGCGCAATCAACAGCACTTACCATCAATCCGGCTCTGCTGGAGGCGGCGAGCATGGCGCGACGGGATCATAATAACGATGATAATGAAATTGACAACGATGTGCAGGCGGCTGCCATGCAAATGATGCAGCTGCGTCGCGGTTATgtagccacgcccacagccacagtcaccaccacagccatagccacaacaacagccacaccTGCTCCAACGGCAACACAGCCCACGCTGCATGTTAGCGACTTGGCAGCCAACTATGATGATACGCACGAGGCGAATCTGCTCATCGATCACTTCAAGCGCGGCGATCTGGCGCGTCATGGACTCCACAAGGGCTATGCGCCAGTGCCCAAGTATGAATCTGCCCTGCCCAATCCGGATATAGTGCGACGCGTTGAGGCCGCCATTGGTCTGCGGTCCAGCACAGAGTCGCCCGAGCGCAGCTCCTCGCCAGAGAGCGATTCGCTAATGATGGCCGATCGGAATGTGATGACGCTGCCGTTGCGCAAGCGCAAGCATTACATGAACGAGACGGAGTCCAGCAATGGCACCACTGGTCCCACCTCAACAGTGGCCGGTGTGGCTGGCAATGGGGATGCGGCCAGTGGCAGCTCTACGGATGCCAATGGCGTCAATGGATCCAAGGTAATGCGCATGAGTTCGGTCATACAATTCGCCAAGGCGTCGTAG
Protein Sequence
MTEHQNGKKSWGAKQNWIKDALNKSGTELVEVTKTKAKATQKKMPAKDSATTNMVYYPANQLLIKTEQPSQAQFCLQGPLAATSSVGIGSAPPSGQHEHYELLQTPQQRQLQLQQQQQQQQQQQQHLANYQINLQQQQQQQQQHNSITTTTTTTSTSAQQRIKTETYAAPAATVGGVTTKAVVAAATTTTTPTATATTRKPNGNKPQFKCEQCGMTFGSKSAHTSHTKSHAKNADMALGIQGGGSSSSISTSSSSSGAIELNEAGLPLGIPKSPTIKPLANVAAGADPYQCNVCHKTFAVPARLIRHYRTHTGERPFECEFCHKLFSVKENLQVHRRIHTKERPYKCDVCGRAFEHSGKLHRHMRIHTGERPHKCSVCEKTFIQSGQLVIHMRTHTGEKPYKCPEPGCGKGFTCSKQLKVHSRTHTGEKPYHCDICFRDFGYNHVLKLHRVQHYGAKCYKCTICDETFKNKKEMEAHIKGHANQLPEDEVEAAAAAALAAASGSSSSIASNSESSNNSPPSSPPATKKPRQARGAKAAAAAAAAAAAAAVVVAAATDPLSPCSVSSTYSPASSNHASPPPQYMVTHAQAEPDALSRDSGVSSAQTVHASYVDEELPTDLSMQQPQPQPQIIYYQQQQQQQQQQQQQQQQSTVPPVSLVELQPQAQSTALTINPALLEAASMARRDHNNDDNEIDNDVQAAAMQMMQLRRGYVATPTATVTTTAIATTTATPAPTATQPTLHVSDLAANYDDTHEANLLIDHFKRGDLARHGLHKGYAPVPKYESALPNPDIVRRVEAAIGLRSSTESPERSSSPESDSLMMADRNVMTLPLRKRKHYMNETESSNGTTGPTSTVAGVAGNGDAASGSSTDANGVNGSKVMRMSSVIQFAKAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00901674;
90% Identity
-
80% Identity
-