Sjav010824.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sphaerogastrella javana
Gene Symbol
-
Assembly
GCA_037040025.1
Location
JBANCZ010004872.1:5453-8555[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.12 53 7.1 0.7 2 23 116 138 115 138 0.96
2 13 0.0086 3.7 10.7 1.6 2 23 147 169 146 169 0.90
3 13 1.2e-06 0.00052 22.8 4.9 2 23 183 205 182 205 0.96
4 13 0.012 5.2 10.3 9.1 2 23 485 506 485 506 0.97
5 13 5.3e-06 0.0023 20.8 3.8 1 23 512 535 512 535 0.96
6 13 0.00047 0.2 14.7 0.8 1 23 540 563 540 563 0.94
7 13 8.3e-05 0.036 17.1 3.7 1 23 581 603 581 603 0.96
8 13 0.00084 0.36 13.9 3.2 1 23 608 630 608 630 0.96
9 13 3.6e-05 0.015 18.2 1.7 1 23 636 658 636 658 0.95
10 13 1.7e-06 0.00074 22.4 0.8 1 23 664 686 664 686 0.98
11 13 3.7e-07 0.00016 24.5 2.7 3 23 694 714 693 714 0.99
12 13 8.2e-08 3.5e-05 26.5 1.7 1 23 720 742 720 742 0.99
13 13 1.1 4.6e+02 4.1 6.1 1 19 747 765 747 770 0.89

Sequence Information

Coding Sequence
ATGCCTGACACGGACACATACAGCCAATTCGATGCGGAGCGCGTCTGTCGCGTCTGCCTGAGCGAAGTGGGAGATTTCTACTTTATCTACGATGAGGCACCCGTGGAGCAGGGCGCGAACATTGCCCAAATACTTAACGAATGCACGCGCTATACCTGCGAGCGGTTCGACAAGATGCCCCATCATATGTGCGACACGTGCATTAAGGCAGCATGCCAGGCGTATCGCTTCAAGAAGGACGCAGAGAGAGCCTACCGCTCGCTGGTGGCCATGATTGGCAAGACGCCTCCAGTTAAGCCAAACAGCAGCGATGTTTGCACACAGACTGAACAAATAGCAATGCTGCCGTGCGGCATTTGCAGTGAGAAATGTATCAATATTCTAGAGTTGCGCCTGCATCGCCGGCGGCAGCATAAAAATGCTTCAGATCTGGATCTTAAATGCAAACTGTGCGATGCACAGTTCAAACAGTATCGCCAGCTGCACAGTCATCTCGTGGAGGAGCACGATCAGAAAGCAGGGACTGTATTGTTACGTCGTCGTCTTGAATGTCGCCACTGTCAGCGTGTGTTCACACGGCGAGATCACCTGCTGCGACACATGCGAACTATACACACAGCGGACAATTTAGATGGTCGACGGCGGCGTCTAAAACGAGAtcgagagcgagaacgagaacgagaaggGCCAGTAGAACATCATGCAGAAACAACGAACAGCACTTGGCCACCCATTGATGAGGAGACCATGCAGAGCGGTGTTGAACTGGAGTCAGCTGATGTATTGCTAAATGACGGTGTATGTTCTGACGATGGTGGCAACATCGACACCATGGATTTTCATACGAATCCCATATCCAGTAACGATGAGGCGGATGATGAGGTGAATGCCGAAGTTAAGAAATCCTTATGGTTACACATTAAGCCGGAACCAGAGCCAGAATCCGATTTGGAAATCGATTTAGCTCAGATGAAACGGGAAAAGCGCAGAAAACGAGCTAAACTGGAGATGACTAAAGAGGATGTACCATGTGTTGAAGAAAGCAACGAAAGGCTAAAAAGTGCAGTGCAGTGCAGCGCCCTGGTGAAGGAAGAGCCATTTGCCACAAGTCAGAGCGAACAGGAGCTGTCCATTAAGCAGGAACGACAGCGTGCTGACGATGATCAGGATGACGTCGAGGAGGAGGaactttttgaaatgaatgttGTGACGCACAGCACGGACGACGAGGAGGACGACGAGCAAGATCTCGAAGAATACgaggacgatgatgatgaagatgaattTGAGATAAAGCCAGATATTGACACTCAAGCTGGACAAGTGGAAATAGTTCgtgaatatttaaagaatcCGCTAACCACGACCAAAGCTCAAAAAAACCCAGAAGGCCAGCAaagacgtcgtcgtcgtcgcaacAAACAAATCGATACCGAATCTAATCCAGAGAATCGATGTGATGTCTGCCAGCGCACTTTCTCCCGCCATTGCCATCTGCTGCGCCACAAATTGTCGCATCTCGAAAAAAAGCCGCACAGCTGTCCACATTGTACCAAAGCCTTTGCACGCAGTGATCATCTCAAGGCGCACGTCCAGAGCCTGCATGGCAATAAGGACCACAAATGCCTGCTATGTGATGCGGCATTCTCCCGGCTCGACGCCCTCGAGCGCcacaaactaaacaaacacaatggTGAGGGTCTCGACGCTAGCAGTGAGGTCAAGTTGCATATGAACGAGCACACCTGCGAGTACTGCGCCAAGCGTTTCTCCAGCAAGACCTATCTACGCAAACATACCCTGCTCCACACCGAATACCTGCATGCGTGCAAAAGCTGCGATGAAACTTTTAAAGAGCGTCAGCAGTTGCGTAGCCATGAGAAGACGCACACGGGTCAGCGTAACTTTCTCTGTTGCATCTGTGGTGATAGCTTTGCGCGGAACGACTATCTGCGCGTGCATATGCGGCGACACAATGGTGAAAAGCCGTACAAGTGCCGCTACTGCGATAAGGCCTTTCCGCGTGCCACAGACCTGAAGGTGCATGAACGGTATCACACCGGCACAAAGCCTAATCTATGCAATACCTGCGGGAAAAGCTTTCATCGCGCCTACAATCTGACGATACACATGCGCACGCACACGGGCGAGCGTCCGTATAAGTGCGATCAGTGCTCCAAGAGTTTTAGCCAAAGCAACGACCTAAAGGCGCACATTCGACGTCATACAGGGGAGCGATACAAGTGCCCACACTGTGATACCTACTTTCTGCAGCTATATCACATGCGCAACCATTGCCTTAGTGCGCACAATCAGCTCATCGAGACAAAGACGGGACGATTGCAGCGTATTGGTTTGTTGGACGAATCCCATCAAAATCATTTGACCACTGTGGTCATGCCACCAAATCAACGGTTTACAGAACTGCCCGGCATAACTGcatcggcaacagcaacagaaacagttgcagtcgcagtcgctgcaaCAGCGCCGTTAGCCACAGCAacctcaacagcagcaattatgGATTCGCCAACACCTTACAACACAGCTTCACCAGTCACGGTACCAGTtgcaggcacaggcacagtcACAGGCACAACACCAGCCGTCGCAACAGCTACTGGATCGgtagcaggagcaacaacagctacaatatCGATGCCCGTTCAGACGGATGGTAATGGTTTCGCGACCAATACACAAACAGCCGGAGCCACCTCAACAGCAtcgacaacgacagcagcgcCGTCATTTAGTGCATTCAATCTTGCACCCGTAATGATGGCACATCTTATGTATAACCACAGCGGCAATAGTCAGCAGAGCAACACTAGCGGCAGTGAGGCGGGCAAATAG
Protein Sequence
MPDTDTYSQFDAERVCRVCLSEVGDFYFIYDEAPVEQGANIAQILNECTRYTCERFDKMPHHMCDTCIKAACQAYRFKKDAERAYRSLVAMIGKTPPVKPNSSDVCTQTEQIAMLPCGICSEKCINILELRLHRRRQHKNASDLDLKCKLCDAQFKQYRQLHSHLVEEHDQKAGTVLLRRRLECRHCQRVFTRRDHLLRHMRTIHTADNLDGRRRRLKRDREREREREGPVEHHAETTNSTWPPIDEETMQSGVELESADVLLNDGVCSDDGGNIDTMDFHTNPISSNDEADDEVNAEVKKSLWLHIKPEPEPESDLEIDLAQMKREKRRKRAKLEMTKEDVPCVEESNERLKSAVQCSALVKEEPFATSQSEQELSIKQERQRADDDQDDVEEEELFEMNVVTHSTDDEEDDEQDLEEYEDDDDEDEFEIKPDIDTQAGQVEIVREYLKNPLTTTKAQKNPEGQQRRRRRRNKQIDTESNPENRCDVCQRTFSRHCHLLRHKLSHLEKKPHSCPHCTKAFARSDHLKAHVQSLHGNKDHKCLLCDAAFSRLDALERHKLNKHNGEGLDASSEVKLHMNEHTCEYCAKRFSSKTYLRKHTLLHTEYLHACKSCDETFKERQQLRSHEKTHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCDKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCSKSFSQSNDLKAHIRRHTGERYKCPHCDTYFLQLYHMRNHCLSAHNQLIETKTGRLQRIGLLDESHQNHLTTVVMPPNQRFTELPGITASATATETVAVAVAATAPLATATSTAAIMDSPTPYNTASPVTVPVAGTGTVTGTTPAVATATGSVAGATTATISMPVQTDGNGFATNTQTAGATSTASTTTAAPSFSAFNLAPVMMAHLMYNHSGNSQQSNTSGSEAGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-