Basic Information

Insect: Sphaerogastrella javana
Gene Symbol: ZEB2
Assembly: GCA_037040025.1
Location: JBANCZ010001873.1:6300-8678[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.4e-05 0.028 17.4 6.7 1 23 214 236 214 236 0.97

2 11 0.00018 0.076 16.0 4.4 1 23 242 264 242 264 0.99

3 11 3.4e-07 0.00015 24.6 3.8 1 23 324 346 324 346 0.98

4 11 7.4e-06 0.0032 20.4 0.3 1 23 352 374 352 374 0.99

5 11 3e-05 0.013 18.5 4.9 1 23 380 403 380 403 0.98

6 11 1.4e-05 0.0059 19.5 4.0 1 23 488 510 488 510 0.98

7 11 0.00046 0.2 14.7 1.6 1 23 514 537 514 537 0.97

8 11 4.5e-06 0.002 21.0 0.9 1 21 544 564 544 565 0.96

9 11 0.0025 1.1 12.4 2.8 1 23 698 720 698 720 0.98

10 11 8.8e-07 0.00038 23.3 1.6 1 23 726 748 726 748 0.97

11 11 2.8e-05 0.012 18.6 2.9 1 21 753 773 753 774 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.4e-05	0.028	17.4	6.7	1	23	214	236	214	236	0.97
2	11	0.00018	0.076	16.0	4.4	1	23	242	264	242	264	0.99
3	11	3.4e-07	0.00015	24.6	3.8	1	23	324	346	324	346	0.98
4	11	7.4e-06	0.0032	20.4	0.3	1	23	352	374	352	374	0.99
5	11	3e-05	0.013	18.5	4.9	1	23	380	403	380	403	0.98
6	11	1.4e-05	0.0059	19.5	4.0	1	23	488	510	488	510	0.98
7	11	0.00046	0.2	14.7	1.6	1	23	514	537	514	537	0.97
8	11	4.5e-06	0.002	21.0	0.9	1	21	544	564	544	565	0.96
9	11	0.0025	1.1	12.4	2.8	1	23	698	720	698	720	0.98
10	11	8.8e-07	0.00038	23.3	1.6	1	23	726	748	726	748	0.97
11	11	2.8e-05	0.012	18.6	2.9	1	21	753	773	753	774	0.95

Sequence Information

Coding Sequence: ATGGATATAGCGTCGCTTTGTCGCGTCTGCATGACGGGTTCGGGCAAACTGATTAATATATTCTCCAAAAGACCCGAAAGCAAGCCCACTATAGAAGACATGATAAACGAATGTGCTGAGGTCAAGGTAACGCGCACCGATTTATTCCCAAAGAAAATATGCCAATTTTGTATTGCGGACGTGCAAGCGGCCTTTCGCTTTAAGAGAAACTATGAAATAACTACCGAACAAGTGACTAAGCGCAACAAACTTAAGAGAGAGTCAAAAAAGAGCGAGTCTATGGAATGCGACGAAACTGTTGCTaaaacaaccacagcaacgaAACGTCAACCGCACagcaaagagagcgaaagtgaGAGCGAAAGCGAATACAAAAACGATGACGAAGACGAAAACGAAGACgacgatgaagacgaagacgaaaacTCGCTCAATAGTGATGCGTCATTGACTGCCGGCGGCATCGGtgagagcgagaacgagagcgagaacgagagcgaAAATTTAGCCACGCTCAGTGacgaaaatatcaaaacaaagaaGGCAAAACTGAACAAATCGCCAGAAACTATTCAAGACTTAACTGAAACTGTGCGAAAGCCATCAAAGAGTCGGAGGGCAAGAAGTGAAGGGAATAcgtattgctgctgctattgcgaCAAGGTGTTCAAGAAGAATAGCTACTTATCGCTTCATCTGCGCGTTCACACAGGTGAGCGTCCCTACAAATGCCCCCAGTGCCCGGCCAGATTCAAGTCTTCATCAAATTGCCATGCCCACCTGCGTACGCATACGCGTAAACAGAATATGCTGCGTACTAGTCAAGCTACAGAGAATACAGCAAGCGGTAAGGATATCGCAAAGAACGACGAAGAGGCAGACGATAAAAAAGATCACCAAATTCTCGACGGGAGAGAGCCAAGCGAAAGAGGAACTACAAAACAATCGAAGAAGAATACAAATAGAACCTTCACTTGCAGTCACTGCGCAAAGAGTTTCAATCGAAACGATAATTTGACGCAGCACATGCGCCTGCATACTGGTGAACGTCCCTACAAATGTCCACAGTGCACCGCTGAGTTCGTATCGTCATCGAATCTCTCTGCCCATTTCCGTATCCACGAGGGCAAATGCCCATACCAGTGCCACATATGCAGCAGACAGTTCAACAAGAAGCAGACGCTGAGACGTCACTACATGACGGCTCATCCGgaagagcaaacaaaagacgaatatgaaaaccaaaacgaTAGCGAAAACAATCATGATGGGGCATCAATAGaacaaaacgcaacaacaagTGAAGCAGTTGATAGGCAGAAGTCGCCGATGGAAATTGAATTCGAGAAGTCGATCgagagcaaagcaaacacagaAGAGCAAGACAACGAGAtacagagcgagagcgagagcgacagCACAATTCCAACtccaactaaaactaaaagtaGGCCTAAGAAGTTCGTCTGTCAAATTTGCAATAGAAAATTCAAACATAAAGCATCGCTTACTCTACACTCTCGTACGCATGATCGCATTCACAAGTGTGAAGAGTGTAAGGCTACTTTCAGCACCTTACCAAAACGGAACAACCACATGCGCGTTGTGCATGACATAAAAGAGATACAATTTATATGCCCGAACTGTGGCCGAGAGTTTCGCGAGAAACATAATCTCTTACGTCATCAGAGAAACTTCGTTTGCACTCGTAAGCGAAAGACTGCCGCGCAAACCGTTTCAAATGAACTAGAACACTTGCGAACGACAGAGAGCGGCGAGCGAGAGACCGAAAACGGTCATACAGAGCTGAatagagaagagaaagagaaaaaagacgAAAACGAGAACGAAGACGTTGAAGTCTACGTGGATGAGGTCGTAAGCGAAAACGACGAAAGCAATGTGCTaatgcaaacaacaacgaagGAGAAGAACGAAGACGATGATATTATTTTCGTAAAAAATGAGCCCATCGAAGACGAACTCATGGAAGATGAAAGCAAACCAATGAGCGAAAATTTGAGTGATAATGCACTGCACGTTGAACTCGTTGAAGTCGAGGCTCGCCGCATGAGTCATCAATTTAAGAAGTACTGCTGCGACGTATGTTCCATTACATTTGTCAATCGCTTGAAACTGATTGAACatatgcacatgcacacaggCGAGCGACCCTTTCAATGCCCACAGTGCGAGAAGAgctttaaaagcaaaaagactTTCCGGGCGCACATGGTCATACATGGTGATCGCAAATTCAAGTGCACCATATGCAAGATAACCTTCGTACGCAAAGATCACTTGCATAAACATTTAGAGAAGAATGTTTGTACGAAGAGAGGCAAATCCGTTAATACACAGAATGAAAACAGTTGTTAG
Protein Sequence: MDIASLCRVCMTGSGKLINIFSKRPESKPTIEDMINECAEVKVTRTDLFPKKICQFCIADVQAAFRFKRNYEITTEQVTKRNKLKRESKKSESMECDETVAKTTTATKRQPHSKESESESESEYKNDDEDENEDDDEDEDENSLNSDASLTAGGIGESENESENESENLATLSDENIKTKKAKLNKSPETIQDLTETVRKPSKSRRARSEGNTYCCCYCDKVFKKNSYLSLHLRVHTGERPYKCPQCPARFKSSSNCHAHLRTHTRKQNMLRTSQATENTASGKDIAKNDEEADDKKDHQILDGREPSERGTTKQSKKNTNRTFTCSHCAKSFNRNDNLTQHMRLHTGERPYKCPQCTAEFVSSSNLSAHFRIHEGKCPYQCHICSRQFNKKQTLRRHYMTAHPEEQTKDEYENQNDSENNHDGASIEQNATTSEAVDRQKSPMEIEFEKSIESKANTEEQDNEIQSESESDSTIPTPTKTKSRPKKFVCQICNRKFKHKASLTLHSRTHDRIHKCEECKATFSTLPKRNNHMRVVHDIKEIQFICPNCGREFREKHNLLRHQRNFVCTRKRKTAAQTVSNELEHLRTTESGERETENGHTELNREEKEKKDENENEDVEVYVDEVVSENDESNVLMQTTTKEKNEDDDIIFVKNEPIEDELMEDESKPMSENLSDNALHVELVEVEARRMSHQFKKYCCDVCSITFVNRLKLIEHMHMHTGERPFQCPQCEKSFKSKKTFRAHMVIHGDRKFKCTICKITFVRKDHLHKHLEKNVCTKRGKSVNTQNENSC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -