Sjav006424.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Sphaerogastrella javana
Gene Symbol
-
Assembly
GCA_037040025.1
Location
JBANCZ010002097.1:2-2399[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.8e-05 0.012 18.5 0.4 2 23 24 45 23 45 0.97
2 16 9.1e-06 0.0039 20.1 5.4 1 23 53 75 53 75 0.99
3 16 0.11 47 7.3 0.8 1 23 219 242 219 242 0.95
4 16 0.0026 1.1 12.4 1.2 1 22 249 270 249 270 0.95
5 16 0.059 25 8.1 1.1 1 23 279 302 279 302 0.92
6 16 5e-06 0.0021 20.9 2.2 1 23 328 350 328 350 0.97
7 16 0.00018 0.076 16.0 2.1 1 23 357 379 357 379 0.98
8 16 0.0019 0.81 12.8 0.0 2 22 406 426 405 426 0.93
9 16 0.0055 2.4 11.3 4.7 1 23 471 494 471 494 0.96
10 16 0.043 18 8.5 0.2 1 23 531 554 531 554 0.95
11 16 0.00064 0.27 14.3 2.5 1 23 581 604 581 604 0.97
12 16 6.8e-06 0.0029 20.5 0.1 2 23 632 653 631 653 0.95
13 16 0.0004 0.17 14.9 3.0 1 23 659 681 659 681 0.99
14 16 2.9e-07 0.00012 24.8 1.6 1 23 687 709 687 709 0.98
15 16 2.9e-08 1.2e-05 28.0 2.3 1 23 715 737 715 737 0.99
16 16 0.0009 0.39 13.8 0.4 1 20 743 762 743 767 0.93

Sequence Information

Coding Sequence
CAGGAGGCAAAAGTATTGAGCACCAAGTTGCGCAGCAAACGCCAACAAGTGAGTCAAGCGGCACAGCTGCAGTGCAGCGAATGTGACAAGGTCTTCAACTGGCCAAAGGATCTGACGAGACACAAGCGCATACACCAACCGACTTCGATGGCCAGGTATGAGTGCACGCACTGCGATCGTAAATTTCATCGTAAGGATGGACTCAAGTCGCACCTGCGTGTCCATGGTGAGCAGTCGCAGCAGCCGCCTTCAGATGTCACTCCTGCCGTAACGAATGCGGAATCCTTGCCTTCCGTTTTGCAACACATGAGTCGTCCAAATGGCTGCAAGCGGATACAATGCATGATATGCCTCTCACAGCATAGCAAAATCTCAGATCTGCGCACGCATTTAGAGACACATCGTTACACAGTACAGTTTCAGGAGTATGCTCAATCAGATAGCGTATATCACAATTTTTATCCAGAACTCGGCACCAACTCAGAGTTGGAGAAACAGCAGCTAATTCAGCGCATACAGGATGATGTATGCAACGGCTTAGAGCTCGACAGATTCACCTCTATAACAAATGAGGCAGGCATAGAGCTAAGTCTGGACAGCAgtgaaacagatacagattccGATGCAGCCGAAACAAAACCATTAGACAGATTATACAGCTGCGATTTATGCCAGGTGCAGGTCGGCCGTAAGCATCTGCTCTATGCGCACCAGCTGGAGAAACATGCCCTTCAACAAGCATCCCATATCTGTGGCCAATGCCAAACCGGATTTGTGAACAAACAGATGTTGGAGCATCATTATCGCACGTTATGCCGAAATTCACAGAAGCGTTTTCTATGCCGTAAGTGTCCACTGCGCTTTCGCTGGCGGAAGAATCTCAAGCTCCACTTGGATATCTCACATCCGGATGGCGCCAGCCGTGCACAACCAGAACTGGCATCTCAGACGCATAGCAAGCGGCTTCTGCCTGTGATTAGCTACGATTGCAAAGAGTGCAATCGCAgcttcaaaatgcaaaaggatCTTACCAGACACACATTGATGCACTCCCAGGATGCGAACATTTACCGTTGTTCCTGGTGCGCACGTCGCTTCTATCGCCATGCAAACCTACTGCAGCATATAGAACGTCATGGCCTATCCGCAGCAGATATGCCCTATGCCCTTACTCTGCTCAATGCCAGTCGGCATCCACATGGCACTAAGAGCATTGAGTGCAAGGTGTGCAACCTGAGCTTTATCACAATTGCTGAACTGCGTTCGCATCTGCTGACGGCCCCAAGTGGCACACACCATGACATCCAGTCGATGCAAAACTATTCAATTACGAATCAACAAGGATTCGAGCTGCATCTAGATGACTCGGAAACGGACGAGGAAACCAAGGCAACGGGTGTGCCGAGCCACTACACCTGCAGCATGTGCCAATTGCGTTGTGTGCGTAAATATGAactgcatcagcatcagcaggccATGCATCGTCTGGAGCGGATTAGTGAGGGTTGTGACCAGtgcatttttaaaagtgtATCCACGGATCTTATTGCTTACCATCACCGTATGCAGTGCGGTAATCTGGAGCTACAATTCAAGTGTGCCGAATGTAACTACAAATTCATGTGGGAAGCGAATTTGTTGCTGCACATTCAGCTGCAGCATGCCGACAAAGCGGAATCGGAAAAAACTGCTCCAGCCCAATCACTGCAGACAGTCGCAGCCAGCGCAGAGGCATCTATCTTTCCGTGCGGTCAATGTCCACGTAAATATAATCGTAAAGATCGTCTGACAGCCCATGTGAAGAAGTGTCACACAACAGACTGTACTACAAATGCCAGCCAGAAGTCTGCCGGAACAAGTGCGCCCAGTGCCACCAAGCAGCAAAAGAGTTTTCTGTGCGCATTCTGTGGAAAAGCAGTCAGCTCATCCTCCAATCTTATTATACACATACGCCGCCACACGGGCGAGAAGCCTTTCAAGTGTGACTTCTGTGAGATGGCCTTTCCACGTTCCTCCGATCTGCAATGCCACAGACGCACACATACCGGAGAACGTCCATACATCTGCACTGTCTGCCAGAAGCGCTTCGCCCGCTCCTATAAGTTGCAACAGCACATGCGTATCCACAACGGCGAACGCCCCTACAAGTGCACCTACTGCGACAAAAGCTTCACACAATCCAACGATCTGAACTTGCACATACGACGACACACAGGCGAACGGCCCTACCAATGCGAAACATGTGGTGAGAGGTTCATTCAAGGCACTGCTCTCAAGAACCACCGCTTCCAGCAGGGGCATTACAGCACGGAAGCAGTTCAATCGCAAACCAACTGA
Protein Sequence
QEAKVLSTKLRSKRQQVSQAAQLQCSECDKVFNWPKDLTRHKRIHQPTSMARYECTHCDRKFHRKDGLKSHLRVHGEQSQQPPSDVTPAVTNAESLPSVLQHMSRPNGCKRIQCMICLSQHSKISDLRTHLETHRYTVQFQEYAQSDSVYHNFYPELGTNSELEKQQLIQRIQDDVCNGLELDRFTSITNEAGIELSLDSSETDTDSDAAETKPLDRLYSCDLCQVQVGRKHLLYAHQLEKHALQQASHICGQCQTGFVNKQMLEHHYRTLCRNSQKRFLCRKCPLRFRWRKNLKLHLDISHPDGASRAQPELASQTHSKRLLPVISYDCKECNRSFKMQKDLTRHTLMHSQDANIYRCSWCARRFYRHANLLQHIERHGLSAADMPYALTLLNASRHPHGTKSIECKVCNLSFITIAELRSHLLTAPSGTHHDIQSMQNYSITNQQGFELHLDDSETDEETKATGVPSHYTCSMCQLRCVRKYELHQHQQAMHRLERISEGCDQCIFKSVSTDLIAYHHRMQCGNLELQFKCAECNYKFMWEANLLLHIQLQHADKAESEKTAPAQSLQTVAASAEASIFPCGQCPRKYNRKDRLTAHVKKCHTTDCTTNASQKSAGTSAPSATKQQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDFCEMAFPRSSDLQCHRRTHTGERPYICTVCQKRFARSYKLQQHMRIHNGERPYKCTYCDKSFTQSNDLNLHIRRHTGERPYQCETCGERFIQGTALKNHRFQQGHYSTEAVQSQTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-