Sjav009583.1
Basic Information
- Insect
- Sphaerogastrella javana
- Gene Symbol
- retn
- Assembly
- GCA_037040025.1
- Location
- JBANCZ010004009.1:1-4935[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.9e-19 1.3e-14 56.9 0.0 18 89 1 70 1 70 0.94 2 3 8 1.1e+05 -5.3 4.4 52 67 206 221 163 239 0.53 3 3 4.3 6.1e+04 -2.9 1.7 20 40 240 265 207 279 0.54
Sequence Information
- Coding Sequence
- ACTCCAATCAATCGGCTGCCCATAATGGCCAAATCGGTACTGGATCTATATGAGCTATATAATTTGGTTATAGCACGCGGCGGCCTTGTCGATGTCATCAACAAGAAACTATGGCAGGAGATCATCAAGGGATTGCATCTGCCCTCCAGCATAACCAGTGCTGCCTTTACGCTCCGCACACAATATATGAAGTATCTGTATCCGTACGAATGCGAAAAGAAGAACCTCAGCACTCCGGCCGAACTGCAGGCGGCCATCGATGGCAATCGCCGTGAGGGACGTCGCTCCAGCTATGGCCAATACGAGGCCATGCACAACCAAATGCCGCTGACGCCCATTTCACGGCCTTCTCTTCCTGCTGGGATGCAACAATTATCGCCATTGGCGCTGGTCACACATGCCGCTGCCGCCAACAATCAGCAGGcgcaggcagcagctgctgctgctgcggcacaTCGCCGCCTGATGGGCGGTCCTGCTTTTGGGCAGATGCCCAATCTGGTCACACAGGAGATTGAGAATCGCATGATGGAGTATCTGCAGCTTATACAGGCCAAAAAGGAACCCGGCTCAGctgtacacacacatcaacagcagcagcagcagcaacaacagcaacagcagcaacaacagcagcaacaggcctTGCACttgcaccaacagcagcagcagcaacaacagcaacaacagcagcaacagcagcagcagcagcgtcaacGCTCACAGAGTCCAGAGCTGAGCACGCGTGAGGCGCTGAGCGCGCAGGTGGCTCTCTGGCATATGTACCACAATAGCAGTCCCAGCGGATCGGCGCATACCTCACCACAGCAGCGCGAAGCCCTGAACCTTTCGGATTCGCCGCCGAATCTGCATTTGAGCCACATTAAGCGTGAACGCGAACGTGAGGGTTCGCCAGAGCCAACGGACATGGACGATGCAGTACATCAGCCGCCGCCGGCGAAGCGTGTGACCAGCAGCCTTATACCACCTGGGTTTCCTGCCAATTTCTATTTGAATCCACACAATATGGCCGCTGTGGCGGCCGCTGCCAGTTTCCATCATCAGGCGAATAGTAAtccgcatcatcatcatcatcacttgaagcaacagcagcaggatgcTGCCTCCGAGGGTGAACCAGATGATGATTATGGCCATGCAGAGCACAATACCACCGGCAATTCATCGAATTTGCACGATGATGGGGATGGACCGCAGCAATTAAAtggacatcatcatcaccttCATCATCACCATGAGCTGCATCACGATGCTGATCATACGCATCCAAATCATCATCAGAATCATTTGGATAAATCCGATGATTCGGCCATTGAGAATTCACCCAGCACCTCGaccacagcatcagcatctggaggcggtggcggcagTGGAAGCGGTGGAGGAGGCGTTGGTGGGAATCGTCACAGTTCGCCCGTGTCCACCAAAAAGAAGAGCAGCACGACCAGCGGCAAGGCACAGAGCAATTCCAAGGATACACATCACGACAATGGCACAGAAAGTGCAAAACACATCAAGCTGAATCCCCTCGAGACACTCAGTCTGCTCACTGGCATGCAATTCCATGTGGCACGCAACGGCACTGGCGCCAATGGCGAACAGCAATTGATGGTCAATCTCGAGCTGAATGGCATCAAGTACTCGGGCACGTTGGTGGCTAATAGAGTAGAAAAGCGAGCGGATCATACGTCGCAGTTGGAGGCGGCAACACCTACAGCCTCTGCCACAGTAGCAGCCAAATCAGAGAAGCTaatgcagcaagagcagcaccAGGTGGAGGAGGACGACGAGGAAGTGGAAGAAGATGAGAAGAgacaaccgcagcagcagcagcaacagccggagcagcagcggcaggggCAGGATCAGGATGAGGAGGTGATAAAGCAAGAGCTTAGCCTAGACGGCAGCCAGATTGAGGCCAATCACGAGCAGAATGAATCGCCCCTAGAGGATATTGTAAATGGAGCGGGCATTGGGGGCGGCAATGGAACGGTGGGCGTAACACTGCTTAAAGATGCTGTGGTCAGCTCATAA
- Protein Sequence
- TPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPSLPAGMQQLSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEPGSAVHTHQQQQQQQQQQQQQQQQQQALHLHQQQQQQQQQQQQQQQQQQRQRSQSPELSTREALSAQVALWHMYHNSSPSGSAHTSPQQREALNLSDSPPNLHLSHIKREREREGSPEPTDMDDAVHQPPPAKRVTSSLIPPGFPANFYLNPHNMAAVAAAASFHHQANSNPHHHHHHLKQQQQDAASEGEPDDDYGHAEHNTTGNSSNLHDDGDGPQQLNGHHHHLHHHHELHHDADHTHPNHHQNHLDKSDDSAIENSPSTSTTASASGGGGGSGSGGGGVGGNRHSSPVSTKKKSSTTSGKAQSNSKDTHHDNGTESAKHIKLNPLETLSLLTGMQFHVARNGTGANGEQQLMVNLELNGIKYSGTLVANRVEKRADHTSQLEAATPTASATVAAKSEKLMQQEQHQVEEDDEEVEEDEKRQPQQQQQQPEQQRQGQDQDEEVIKQELSLDGSQIEANHEQNESPLEDIVNGAGIGGGNGTVGVTLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -