Sinv002548.1
Basic Information
- Insect
- Solenopsis invicta
- Gene Symbol
- NFXL2
- Assembly
- GCA_016802725.1
- Location
- NC:5309698-5314358[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.87 4.1e+03 -2.4 1.1 15 19 122 126 121 126 0.81 2 14 0.12 5.5e+02 0.4 0.8 4 10 157 163 156 163 0.95 3 14 4.4e-08 0.00021 20.9 15.1 1 18 171 187 171 188 0.98 4 14 1.9e-07 0.00091 18.9 11.0 4 18 227 241 225 242 0.94 5 14 0.12 5.8e+02 0.3 0.5 9 13 259 263 258 264 0.86 6 14 1.2 5.5e+03 -2.8 1.5 6 10 267 271 267 271 0.97 7 14 2.6e-05 0.12 12.1 12.4 1 19 277 296 277 296 0.93 8 14 2.2 1e+04 -3.7 1.0 5 10 321 326 321 326 0.65 9 14 0.00016 0.77 9.5 9.6 1 18 332 349 332 350 0.97 10 14 1.5 7.2e+03 -3.2 0.5 6 10 374 378 373 378 0.88 11 14 0.052 2.5e+02 1.5 10.7 1 12 384 395 384 396 0.95 12 14 1.5 7e+03 -3.2 1.5 6 10 405 409 404 409 0.88 13 14 3.9e-05 0.18 11.5 10.3 1 19 415 433 415 433 0.91 14 14 2.8 1.3e+04 -4.0 0.9 6 10 462 466 460 466 0.51
Sequence Information
- Coding Sequence
- aTGCAGAAATTTAAGAAAGCTCGAGTACAGAAACAGTCTATCGAAAAGCATTTGGAGACCAATGAGTTATTCAGTGAGGAGGAGGATGACACAAATGAGGAAGATGTTCAAGATGTAGTTGGCAAAGTATTATCGGCTTATCAGGGACAGAGTACAGATGCGGAGAAAGTAATATCGTATCTAGTTAATTTCTTTCAAAGCAGCACTTCTGTTTGCTTGATATGTATATCAACTGTCAAGAAGATAGATCcaATATGGAACTGCGACAAATGCTATGCATTTCTACACATGTCGCGTATCCTATACTGGATCAATGACAGTTTGAGCTACAAACGGGTTAAAGGAATCACACCGATCTGGGCATGTCCAAAATGCCGTATGGAGTACGACCAAGATCAGTTTCCAAGATCATACAAATGCTTCTGTAAAAAGACCGTAAATCccctgtatacacccTGGATCATTCCACATTCTTGCGGCGAAACTTGTGGCAAGCTTCTGCAACCGGAGTGCGGTCACAAGTGTGTGCTGCTCTGCCATCCTGGTCCGTGTCCACCCTGCGCCAAGATAGTGTCGGCTAAATGTTACTGCAGCAAACTACCGACACAACCGCGGCGTTGCAACGCCAAAAACTGGAGCTGTGGTATTGCGTGCAACAAAAAATACGAGTCTTGTCTGCACACTTGTAACAACCTATGTCATATTGGAGAATGTCCCCCTTGTGCAGAAGCAGTATTACTGAAATGTCATTGTAAGAGTAACGAGAAGATAGGAAAATGCCACGAAGGCACGTGGATCTGCGAGAAACTTTGCAACAGAAGATTCTCTTGTAACGTACACAGTTGCAAGAGCACTTGTCATTTACCCGGTGACTGCGGCAACTGTCCCCTGGAAAAGAATAGATGTTGCCCCTGTGGAAAGAAACGATATGAAATTTCTTGCAGATGGCAGCAAGTGCCAACGTGTGGCAATACATGTGGCAAATTGTTGGACTGCGGCTCACATTTTTGCAACACGAGATGCCATACCGATCGCTGCGGCCAGTGCCTGGAAGTCGTAACAAAGGTCTGCAGATGTGGTAGTTACAAGAAAGAGATCGCCTGTACGAAAGAGTTCTACTGCAACAAGAAATGCACACAGACACGCTTGTGCGGTATACATTTGTGCAATAAGAAATGCTGTGACTGCATGTTGAAAAACACATCCAATCCCTGCGAGAAAAAATGCGAGAATACACTCAACTGTCGCAAACATAAATGCACCGCGCCTTGCCACAGCGATCTTTGTTACCCATGCACTAGAACGGACATTATACAGTGTCCATGCGGCAGCAGTAAGATAACGGTACCGTGCGGTACCAGGAAGAGGATCAAACCACAGCCGTGTAACAAATcctgtaaaattatattataa
- Protein Sequence
- MQKFKKARVQKQSIEKHLETNELFSEEEDDTNEEDVQDVVGKVLSAYQGQSTDAEKVISYLVNFFQSSTSVCLICISTVKKIDPIWNCDKCYAFLHMSRILYWINDSLSYKRVKGITPIWACPKCRMEYDQDQFPRSYKCFCKKTVNPLYTPWIIPHSCGETCGKLLQPECGHKCVLLCHPGPCPPCAKIVSAKCYCSKLPTQPRRCNAKNWSCGIACNKKYESCLHTCNNLCHIGECPPCAEAVLLKCHCKSNEKIGKCHEGTWICEKLCNRRFSCNVHSCKSTCHLPGDCGNCPLEKNRCCPCGKKRYEISCRWQQVPTCGNTCGKLLDCGSHFCNTRCHTDRCGQCLEVVTKVCRCGSYKKEIACTKEFYCNKKCTQTRLCGIHLCNKKCCDCMLKNTSNPCEKKCENTLNCRKHKCTAPCHSDLCYPCTRTDIIQCPCGSSKITVPCGTRKRIKPQPCNKSCKIIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -