Sinv007014.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Solenopsis invicta
Gene Symbol
-
Assembly
GCA_016802725.1
Location
NC:983574-1000443[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.47 42 4.6 0.3 1 23 336 361 336 361 0.97
2 16 2 1.8e+02 2.6 0.4 3 23 376 396 375 397 0.79
3 16 2.8 2.5e+02 2.1 3.2 1 23 403 425 403 425 0.96
4 16 0.00044 0.039 14.1 0.3 2 23 431 452 430 452 0.97
5 16 0.055 4.8 7.5 7.2 2 23 734 756 733 756 0.95
6 16 1.8 1.6e+02 2.7 1.0 1 23 824 846 824 846 0.82
7 16 0.77 68 3.9 1.2 2 23 1024 1045 1023 1045 0.96
8 16 0.29 26 5.2 0.1 3 23 1062 1082 1060 1082 0.96
9 16 0.018 1.6 9.0 0.6 1 23 1090 1112 1090 1112 0.98
10 16 0.93 81 3.6 0.8 2 23 1210 1231 1209 1231 0.94
11 16 0.076 6.7 7.1 1.1 3 23 1243 1263 1241 1263 0.96
12 16 0.0016 0.14 12.4 0.2 1 23 1340 1362 1340 1362 0.98
13 16 0.028 2.5 8.4 0.3 1 23 1433 1455 1433 1455 0.97
14 16 2.2e-05 0.0019 18.2 0.7 1 23 1461 1483 1461 1483 0.97
15 16 0.0042 0.37 11.0 2.6 1 23 1549 1571 1549 1571 0.97
16 16 0.00069 0.061 13.5 1.7 1 23 1577 1599 1577 1599 0.99

Sequence Information

Coding Sequence
ATGTCGGGACGGAGAATCGGAATTGCAGATGGCGCCCGGGCCGCGCCATCGTCATTGCCTTCGCAACCGCTGGTCGAGTCGGCCGACCCAGCAGGGGCGCGGCGGAGGGGTGGAGGAGAGAAGGAGTCGCGCCCGTTCGCCTTCTCGTATAGTCTTCCTACGATCCACTATCCGCTCCGACGGTCAGTGCTGACGCCGGTGACGAAAGAGCGATATTCGCGATCGAAGAGTTCGGTGAGACCAGAGTCGTCCGACGATGACGGTGTCTCGCGTCGAACGATAGAGAACGTGGTGAATAATTCCTGcgcgaagaaagagaaagagagagggagagggagatccaggagcaagcgagcgaggagCGAGCGAGTgaaggcgcgcgcgcgcgcgcgtgtgcacgCCATGTTTCCTGCAGCGGGCAAGGGCGAGCGAAGAAGTCTGCGCGGAAGCGCACGGCTCTCGTCCAAGATGTCGGGAAGACCGCCCCGGTTGCGTGCCCTGCGGCCGCGGGCGCAGCATCAGAGACGAGGGAAAACGGAGTCCCAGGCCTCCGACGCGACCACGCCGAGATCGGAAGGTAACCTTAAACGGGCCGCGGCGAGTCACGAGGTGGAGCACAATGCGAAGAGATACGACGCGAAGAAGGGCAAAGACACTACCACGAccaagacgacgacgacgacgacgacgacgacgacgacggacacGTCTGACGCTGTGAGTAAGACGCACGATGCGATGGACGGAATTGAaaacaacaacgacgacgacgacgagctaACGGTGACCGCCGTCAACACCGTCAACACCGTCGAGGCCGTAGCCGAGGATGAGGCGGAAGAGGATGGGGAGATGAAGGAGAagaacaacgacgacgacgacgatgacgacgatgaggCGACGCTGGACGGCAACGTCGACGTGGATGTCGACATCGACGTTGACGTGAACGTCGCGGTGAATTCCGCGGAGACGATCGACGTCGAGGCAAACGGCCAGGCGTCTTACGAGTGCAAGACCTGCGATCCGCCGAAAATGCTGTCCAGTATCAAGGCCTATTTCGAGCATCTGCGAAAGGAGCACAAATATAAGgGCAAAAACGGGCACAGTCCAGTCGAAAATCGTTGCCCTGCGTGTTCGTATGTCGCATTGAACGTGAAAGATCTTGAAAATCACCAAAGAGTGCAtcatttgaaaagaaaattttttcgatGCGCAAAATGCGATTACGTGACGCACATCAGAGCGCGTTATACTAAGCATGTTAAATATCATTCTATGCCGATGATCAAGTGCGATGCTTGTGATTTTAGTTCAGCGTATAAGTGGAATCTAGAAAGACACATGCGGAATCATGGAGGTGGAGGTGCTTTCAAATGTCGTGCATGTAATTTTACTGCTGATATCCGTCAGAGCTTAACGGTGCATGAGTCGTATCATCATGACCCACCTGTCGGTCAGATCAACCGCAAAAGTAATAACGCTTTCGAACGTAAGCCACGAAATAGTCCAAAACGTTACAATCAGGTTGGAGCCAGTGACTTTCgagaagttttaaataaaagtggaAGTACAACCACCTCGGTCGGTTCTTCCGATTCGTTCGTATCAGATCACTCGCTAATTTCGATAGACGATAAGAAAAGCGCCCTGGCCAACGCCGAGTGCATCGCGTTAAAATGCGAGGAGAAAGGCTGCCAATTTATAACAGCCTGGGACTCTGAGATGCAGCGTCATTTAGCGGAGTGTCACGCGCCGGTTTCTCCATCGAAGCCAAGAAAGCCACTGCCGATGTTAATTCCATTGAGCCTAGCGAGCACCAAGTCCAATAACACGGTCAACAGTAGCGGCCCACCTACGACCCTATTGAAAGTTCCGCGCGTTAGAGTGAGACCTGAACTGGCGCAAATCGCGAGGGATACGGAGCTAGCTAAGATGAACAAGGAGGCCGCGAATTCGAAGAGGAATTTCAATACTGCCGCTGGGGTATTCGAGAGAAAGAATGCCTCCTTCTTCGATAAACTGAAGGAAAAACTAACGACGACCGCGACGTCGATTAATAACGGTGTGCCGGAGGTAGCTGTAAGTAATGAGAACGACTTGAAATGCTGGTGTACGTTTAAAGCTAGTAGCATGGAGGAGCTAGCTTGCCACAAACAGACACACCACACCGCGCTCAGCGTGTCCGTGGGCACGACACGTTGCCCTAAGTGTAGAAGACGTTGCAAGAGTACAACCGATCTCCAAATGCATATGCAATACTGCCATTCGCGCAACGACGCAACGCCGTCCATCGATAGTAGTTTAGAGAAAGTAACGAATCGTTCTCGCTCGGACGTCCGCATGACCTCGTATCGTGACGAATACTCTTTTCCGTCGCAATTGGATTGGGACGCGAATCTCAGAGGACTAAATTCTTCTGGACCTTCGTTTGAAGGTGGTCCGACACATCCGAGCGGACGACGAGTATTCAAATGTCCCCATTGTCCATTTTGGGCTTCCACCGCAAGTCGCTTTCACGTACATATAGTCGGTCATTTAAACCGGAAGCCGTTCGAGTGTTCAATGTGCGCGTATCGTTCTAACTGGCGATGGGACATCACAAAACATATTAAGCTTAAAGCGGCTAAAGACGCAGTGCATACGAGCGCCAGAGTGCTCATGACGGATGAGACAGGTCGACGGAATTATtccaaatataacaaatatctcGCACAGGTAGAACAGCAATCGTGGGACGAAGATCGTATGGAACAGCGTAGCATAGAAGAAACAAATTCTGAAGAAATGCCGACGAAATTGGTGATTGTGGACAACAAAGAGTACGTTCCGTTGACTGGCCCGACGTCGCAATCTTCTATCACGATTATTCCGTCGAGTGAGGcaaatcaaaatattcaaaatgtagACATAAGTCTGCGACCTCCACCACCGCTCAAAGCAGCGGTTAGAAGTCGTGGACAGTCTCTGTTGAAGAACAGTCCGATTACGATGCATATACATACTCCTAGTGGTGGTGGTGCGGTCTCTATATCTCCAGCGATAGATGAGAGTAAACGCACTCAGTGGAAGTGTAAACGTTGTAATTACCGAGATACCAACAAAGATAACGTGTTGTTGCATGTTAAATCTCATTACGAATCTGCTGATCATGAGTTCATAGAAGAAAGGAATCCATTTGGTTGTGGGGATTGTCCATTTTCAGCATCGGACGCTGCTACTCTGTCTCTTCATAGGCTAAACCATCGGCCAACCTTAGAAGCTATATTTAAATGCTATCTTTGTCCATACTACGTTAAAACAAAGGCaGAATTATTGGAGCACTCTAGACTCCACGGGGAAGAGCTGGCAGCTATGCATCAGCAAAATACGGATGTTCAAATTTCTAAGAATAAATTGCAACAAATATCAATTTCCGAAGGTGgtGTTTCACAAACAAAAGACGAATCGTCCATAGAACAAGTAATTCAGATAACGTCGCGTAACAATGTAACGGCATCTTCAAAGATGACGGAAGCTCAGTCGTCACCGCCTCCACCACCGTCGCTTCTTCTAGATACTCGTGCCCTTCCGGATGCTCCGTTGGTTTGGGTATCGAAGCTAGATGGCACTCTGACGAAGATGCTCAAGTGTCGCCACTGTCCGTTCATCTCATCGCGACGTGCGGAGGTGCTTGATCATGAGACAATGCATGTAGACATGCCAACGCAGGGACCCTTCATCGCCTGTACAGACTGTAGCTTTACTTGCTCGCGTCGGGAGGTCATGACCGCACATACAGAAATGCATGCGGGATCTCTGGGTACCGTTCATTGTCTTGTCGATGAAACACGACCTGATGCCCAACAGGCGAATGATCTGGCCACTCTACTTGGCATGCCACAAACTCCTATGTTAGGTAGTGAGCCTGATCTACAGGATTCCCGTCTTGTGCATTGCTGCGGCAAGTGTCCGGCGCGATTTCTGTGCGAGAAAGAGTTGCGTATTCATCTGCGGTACCACACCACGGAACTAGCGTATTCATGCCAATGGTGTTCATATGCAGCGCGACAACCGGCGCATTTGATAGCTCATCAAAAGGCGCACTCGACAGAATATCAGGAGCGCACCAAATATTTGTTGTCGTTGTACGGTCACTCGCAGCGTTATCCTCCGCCTGCGACAGCATGCGTCGAGACGGATAATCGGGACACTGACAGTGGGCCGAATGTCGCGTGGATCGTCGTTGAGATCAATGAGAATGCGAACAACTATATCAATGGTACTACAACCGTTCAAAGAACTGGAAATCAGGTATTTACGTGCGCCAAGTGTCCAGCTCGTTACTTCAAATTAGATGCTTTGGAGTACCACATGACGCTTCACGGTTCAAATAATCGGTTCAAATGTAATGATTGCGATTATTCGTCGAAAACAGCACAAAATCTATTGAAACATCAGGTAGTACATCGACGGCACAATGAATCCAGCGAAAGTTCGACTGCGGAACTATCATCTACCCCCATTGCTGAAACTACTCCGACATCTTGTCCCGAATCTCCAGTGCAATCATCACCGGATCCACAATTCGGTGTCTTTATGCGTGGCAATCCAAACTTTGTTTATCCAGGTTATCTACGGAACGGCCGTTTGAAGGAAAAGCGCTACAAATGTCACAAATGTCCGTCCGCTTTTGAAAAGCGTGAGCAATATAGGGTTCATCTGACTTTGCACGGTGCAAAACAACGCTATCGCTGTGATACGTGTGACTACTCGGTGAAATACTATGCGAATTACATACAGCATTTGAAGAAACACCAGGCAAACGCGGAAGCGCAGGCATCTCGCAGACAATTTGAGGACGACCGAATTTCAGTGGATAGCGATAGCTTCATCGATGCAGGTACGGCAACATCGTCACGCAAGTCTTCGCGATCGTCTGCTGTTAACACGCTTGCGGTATTGTCTTCTGTCAATAATGCTACCCTGCAACCCTCTAATCAGGATAAGCAAAGTTTActattgatgcaaaaaaaagGCATCATTTCATCAATGGGTGACGCCGACGCGGAGACGATCCGCTGCCTGAGTTGTCCGTTTTCCACTATCGATAAAGATATCATGGACTTGCACAAACGTCGCCATGGCATCGAACGCATGACGCCGTCGTGTCCGCATTGCGACTACATTCCGCGAAAAGACGAGAACATCGGTGAGCACATTAAGCTGCACTTTACAAGGATGTACAAACCCGAATCTTATCTTATAGTCGAGATGCTTACGTTAACGATGGAGAAGGTATCCGCCAACAGCAAGAGTGAAAAGGGTCAGCGGTTGAAGGAATTATTGTTCAAGGAATGCGAGGATGGTAGATTCCTACCACTCACAGAAACGGTCAACTCTCTTTCTCTACGTACTTCCACCTCGACAATGAAGGCTACCAAGGAGAAGGTTATCATAGACCCAAACACAGGCGAAACTAAGCATCGTCTTGCCACGTAA
Protein Sequence
MSGRRIGIADGARAAPSSLPSQPLVESADPAGARRRGGGEKESRPFAFSYSLPTIHYPLRRSVLTPVTKERYSRSKSSVRPESSDDDGVSRRTIENVVNNSCAKKEKERGRGRSRSKRARSERVKARARARVHAMFPAAGKGERRSLRGSARLSSKMSGRPPRLRALRPRAQHQRRGKTESQASDATTPRSEGNLKRAAASHEVEHNAKRYDAKKGKDTTTTKTTTTTTTTTTTDTSDAVSKTHDAMDGIENNNDDDDELTVTAVNTVNTVEAVAEDEAEEDGEMKEKNNDDDDDDDDEATLDGNVDVDVDIDVDVNVAVNSAETIDVEANGQASYECKTCDPPKMLSSIKAYFEHLRKEHKYKGKNGHSPVENRCPACSYVALNVKDLENHQRVHHLKRKFFRCAKCDYVTHIRARYTKHVKYHSMPMIKCDACDFSSAYKWNLERHMRNHGGGGAFKCRACNFTADIRQSLTVHESYHHDPPVGQINRKSNNAFERKPRNSPKRYNQVGASDFREVLNKSGSTTTSVGSSDSFVSDHSLISIDDKKSALANAECIALKCEEKGCQFITAWDSEMQRHLAECHAPVSPSKPRKPLPMLIPLSLASTKSNNTVNSSGPPTTLLKVPRVRVRPELAQIARDTELAKMNKEAANSKRNFNTAAGVFERKNASFFDKLKEKLTTTATSINNGVPEVAVSNENDLKCWCTFKASSMEELACHKQTHHTALSVSVGTTRCPKCRRRCKSTTDLQMHMQYCHSRNDATPSIDSSLEKVTNRSRSDVRMTSYRDEYSFPSQLDWDANLRGLNSSGPSFEGGPTHPSGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSMCAYRSNWRWDITKHIKLKAAKDAVHTSARVLMTDETGRRNYSKYNKYLAQVEQQSWDEDRMEQRSIEETNSEEMPTKLVIVDNKEYVPLTGPTSQSSITIIPSSEANQNIQNVDISLRPPPPLKAAVRSRGQSLLKNSPITMHIHTPSGGGAVSISPAIDESKRTQWKCKRCNYRDTNKDNVLLHVKSHYESADHEFIEERNPFGCGDCPFSASDAATLSLHRLNHRPTLEAIFKCYLCPYYVKTKAELLEHSRLHGEELAAMHQQNTDVQISKNKLQQISISEGGVSQTKDESSIEQVIQITSRNNVTASSKMTEAQSSPPPPPSLLLDTRALPDAPLVWVSKLDGTLTKMLKCRHCPFISSRRAEVLDHETMHVDMPTQGPFIACTDCSFTCSRREVMTAHTEMHAGSLGTVHCLVDETRPDAQQANDLATLLGMPQTPMLGSEPDLQDSRLVHCCGKCPARFLCEKELRIHLRYHTTELAYSCQWCSYAARQPAHLIAHQKAHSTEYQERTKYLLSLYGHSQRYPPPATACVETDNRDTDSGPNVAWIVVEINENANNYINGTTTVQRTGNQVFTCAKCPARYFKLDALEYHMTLHGSNNRFKCNDCDYSSKTAQNLLKHQVVHRRHNESSESSTAELSSTPIAETTPTSCPESPVQSSPDPQFGVFMRGNPNFVYPGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCDTCDYSVKYYANYIQHLKKHQANAEAQASRRQFEDDRISVDSDSFIDAGTATSSRKSSRSSAVNTLAVLSSVNNATLQPSNQDKQSLLLMQKKGIISSMGDADAETIRCLSCPFSTIDKDIMDLHKRRHGIERMTPSCPHCDYIPRKDENIGEHIKLHFTRMYKPESYLIVEMLTLTMEKVSANSKSEKGQRLKELLFKECEDGRFLPLTETVNSLSLRTSTSTMKATKEKVIIDPNTGETKHRLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00127818;
90% Identity
iTF_01354960;
80% Identity
-