Basic Information

Insect: Solenopsis invicta
Gene Symbol: -
Assembly: GCA_016802725.1
Location: NC:7134193-7153812[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.6 2.3e+02 2.2 4.3 1 20 164 183 164 185 0.88

2 18 3.8 3.4e+02 1.7 7.4 1 23 226 249 226 249 0.93

3 18 0.0033 0.29 11.4 1.4 1 23 674 697 674 697 0.94

4 18 0.17 15 6.0 0.6 5 23 704 723 703 723 0.94

5 18 1.1 1e+02 3.4 3.1 2 23 729 750 728 750 0.97

6 18 0.00013 0.011 15.8 0.4 1 20 777 796 777 797 0.96

7 18 4.1e-06 0.00036 20.5 0.0 1 22 930 951 930 951 0.97

8 18 0.00015 0.014 15.5 0.1 2 23 958 980 957 980 0.93

9 18 7.5 6.6e+02 0.8 5.8 1 23 990 1013 990 1013 0.90

10 18 0.14 12 6.2 0.2 2 21 1040 1059 1040 1060 0.91

11 18 3.8 3.4e+02 1.7 4.2 1 23 1067 1090 1067 1090 0.85

12 18 0.024 2.1 8.7 3.5 1 22 1101 1122 1101 1124 0.89

13 18 0.13 11 6.4 1.5 1 20 1166 1185 1166 1187 0.96

14 18 0.63 56 4.2 6.6 1 23 1194 1217 1194 1217 0.95

15 18 1.5 1.3e+02 3.0 1.9 1 21 1226 1246 1226 1249 0.77

16 18 0.006 0.53 10.5 1.1 1 23 1292 1315 1292 1315 0.92

17 18 0.22 20 5.6 0.6 1 23 1633 1656 1633 1656 0.96

18 18 0.045 4 7.8 0.6 2 23 1680 1702 1679 1702 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.6	2.3e+02	2.2	4.3	1	20	164	183	164	185	0.88
2	18	3.8	3.4e+02	1.7	7.4	1	23	226	249	226	249	0.93
3	18	0.0033	0.29	11.4	1.4	1	23	674	697	674	697	0.94
4	18	0.17	15	6.0	0.6	5	23	704	723	703	723	0.94
5	18	1.1	1e+02	3.4	3.1	2	23	729	750	728	750	0.97
6	18	0.00013	0.011	15.8	0.4	1	20	777	796	777	797	0.96
7	18	4.1e-06	0.00036	20.5	0.0	1	22	930	951	930	951	0.97
8	18	0.00015	0.014	15.5	0.1	2	23	958	980	957	980	0.93
9	18	7.5	6.6e+02	0.8	5.8	1	23	990	1013	990	1013	0.90
10	18	0.14	12	6.2	0.2	2	21	1040	1059	1040	1060	0.91
11	18	3.8	3.4e+02	1.7	4.2	1	23	1067	1090	1067	1090	0.85
12	18	0.024	2.1	8.7	3.5	1	22	1101	1122	1101	1124	0.89
13	18	0.13	11	6.4	1.5	1	20	1166	1185	1166	1187	0.96
14	18	0.63	56	4.2	6.6	1	23	1194	1217	1194	1217	0.95
15	18	1.5	1.3e+02	3.0	1.9	1	21	1226	1246	1226	1249	0.77
16	18	0.006	0.53	10.5	1.1	1	23	1292	1315	1292	1315	0.92
17	18	0.22	20	5.6	0.6	1	23	1633	1656	1633	1656	0.96
18	18	0.045	4	7.8	0.6	2	23	1680	1702	1679	1702	0.95

Sequence Information

Coding Sequence: ATGGCTAGAGTTCATTCGTATGAAAGAGTTGTCGACGCTATACTCGTGAACAGAGATCCAACAtttgatACAGCAATTCAAAATGAGGTGAAGATTAAAGAAGAGCCCAGCGATACGACAACAAATTCTGATGAAGAAACTGAAGATACATCAGTTAAACGTTGCTTTAGTTTGATTGACCACGATTATCATCGCGACAAATTATcacttaaaaatgatatttcatGTAAAGACataaataatacagaaaataaaCCTTCATCGAATAGTCATTCTGTACGTCCAAATGATGTAAATAAGACTATTAATATAGAgcgtaaaaggaaaaaagaaattgataatacctcaatacaatttaaaaaacaacgTTTCAATCAAATTTCTAATAATGAGAACACTAATGTATCACACGCAACTAATAATtatagggaaaaaagaaaactacGACATACAAATGAAAAATCAGTAAATGAAAAATTGGTCAATCTATATAAATGTGATGTATGTTTTAGAAAGTTCCCTTCtttcaaaaattgtacaatccataaacaatattatattaaagaaaaaggtACCTATTGCCTCCTTTGTAAAAAGCTTTACAAGAGGTCTGACAAAGTAGCACAAGAGGAGATACAATCTCATCTTCGTAAACATGTTAAACGCAAATACACATACAGATGTAATTTTTGCTGCCGTTCTTATAAGACTAAAGAGGTTTTACaatctcatttatttcatacacACAAAAAGTTAATATGTTTTAACAACACAATTAAACGCGGCACTTCCAAATCTGAGAATGTAAATACATCTCATAAAAATGATACTTTAAGAACTcgtgcaaataaaaaatcattatgttCAAATAATCTCGTTAAACCAGAAAAGATAGATACTGTACTTACAAATGAGGTCAATAAATCTTGCGATAATAATGTGACGGATACTGAGGAATCAAGGATCGACAAATCATCCAATAGTGAAAACTCGCCAACTGATAAAAAATTACGACAACCAACATTACTGGAATTTCTTATAATTACTGGAAAGAAACTCgatatgaaaatgaaaaaaattgaaagtgaatTAGAAGCCTTAAAAGAGCGGAAAGAAAGTGAATTAGACACCtttttaaatacacaaaaagAACATCCAGAATCAGTACTTCCCGAAGGAcataatgaacaaattaattCCTCACCTACAAAATCAGATAATCTTCCAAAACAAAACGAATGTTCTACTCTGGAACAagatatgaaacatgaaaaattaaacaagccatttgtaaaattacatgCGGATGTTGAAATAATGAAATCTTTTCTAGACAACCTTTCCAATACAGCTGTTAAAGATAAAAGGACTGAGGATCGAACAAGTAACATTACTTCATATGATCGTGGGATACCCTATAGTTTACGATCTCAAAATGGAGTCTCATATATCGTAGAAGTAGATCCGAATATAGGAATGAGGAAGATGAAAAATGTTTCTAAGAAGTCTCGATTTAACATAGAATGTAGTACTGAAAAAAAACGAAACATGATTGACTCAAACAAAGTAGATTCTAAAGTAGATTCGAAACTTAGGGCTCGTTTTAAGTGCAAggagtttacaatttttttaacgagATGTAATGAACAACCAAGAAATTCTTATCGGATTTCAACAACAACTGATACCACGAGAAACACCTTCCGAGAAACTACTCAAGGCAACGTTACATTGGATCACGAAAGTGATGTGCAAAATACAGTAAAACTCAAAGACTTAGAAATTTCTTTGGAACGTTTAACAACTGTTccagatataaaaattacagatgTAAAAACTACAGATGTAAAAACTGCAGATGTAAAAACTACAGATGTAAAAACTACAGATGTAAAAACTACAGATGTAAAAACTACAGATGTGAAAACTACAGATGTAAAAACTACAGATGTAAAAACTACAGATCCACAAACTACAGATAAAGAAGAATCGGTCTTCGAAAagcataattacaattattttttgtgtaaagtTTGTGAGAAGAGTTTTACTTCAAAATTAGCCAAACGCTTACATATTAAGTCGTCTCATTTAGCATATATGTCAAGTATATGTGATGCACGATATTCATCGAGACATAAATTACTTCAGCATTATCTAAGCGAACATCCATTAGAACAAAATCAATGTTGTATTTGTTATACGTTATTATCCAATTATGAAGAGCTGAAGCAACATTTACACGTTCATTGTCTGAAGTACATTCGAAGAAAGGACGATCAACATTCAGTAGATATTGAGATAAATTGTAGCTTGATCAAAAACGATTTTAAGTGTTCTCAATGTGATAACACGTTCTCATCAGAATCATCTTTAATGGCACATCAAAGTTGTTGCACAGTGATGAAAGAAAATCAGGAAGATGTCATGGAAGGAACAAGTGCACACCCGAAAGACAGTCTTAAGATGCAGCAGAAGAACAccgaaaaaaatatacttacatgTGATGAAAGCGCTAATCTAGATGATTCACATGAACTCTTAAATAAAGACTGTGTAGAGAAACCAAGCGAGCACCAAGCTTCGCTTCATGAAAAAGAATCGCAAATTAATGAAGTCCAACAAAACGtttctgataataataatttattaattgaaaaggAACTCGacgaaaaaattgttaatcaatCACAAAATTCTAAAAAGCTTTTAGAAAATAGTAATTCCACAACTAGTAATCAGAATATTGTGAATGCGCTATTGGATGATGTTACAGGAAAAATGACTTATCCTTGCGATATATGTGGAAAACAATTTCAGAATCCCAAAAATTTGGAGGCACACGTACgcacttttaattttactagCGATACTTGTCCAATGTGTGGCACCGGATTCGGGTCTAAACGTCTTTTACAGACTCATATGACTGCAGCGCATGTACCacaaatttcaaagaattacaattttcattGCGTATTTTGTAATCAaggttttttcaaaaaacatgaACTTCGGCCTCATATATTACACTTGCATGGTCAACAAATGCTCAACACCCTTACACGCAACCCCAACATGAGACAAGAGAAATCTAATGAAACATGTACTACTGCAGtgtgtaatatttgtaatttagtATTTGAGACTCATGACCGTTACGTAGAACATCGGATGTATTATTACGAAAACCATACATTCGAGTGTAAACTTTGTGAACAAACCTTTCAGGGGATGTACATGTATCATCATCATAATAAACTTGTACATTATTCAGAAGATAAACGCAAGTCATACAGTTATATCTGCGACATATGCAACGAAGGATTCAATCACGAGTCACATTTTTATTCTCACAATATACATGTTCATTCGAATGAAGTAAATTTAGctgaaaaagaagagagaagccGTTTAGATCACTTAACCGATACTATGGAGCatgttagaaatatttttacgaaacaaaaacaaaataaacagcCATCCAACGAGTATACTTGTCAAATTTGTCAGCTGAAATGTATAGATATGAATCATATGGAAAAGCACATAGAGTTTTATGCCAATGATGGCCATTTTAAATGTGATAAATGTAAAAGACGATGTAGAACATTTTCTATACTTAATCAACATAAGAAATTAACTCATTATTGTCGTGATATTTATAATGGATACATGTGTCATATTTGCGGTGAAGTTCTGGAAACAATTATTGCATTGAAATGTCACGAGAAACACTCTCATCCAGATATTACTGGCAATAATACGGATAATGGAAAGAATTGTACTCGGATTTCATCTTCGAACGTTACACAGAAAATAACAGAACATCCATATGAACGTAAGAATGATATATCTAATGTAACTGAATACAATTGCGTATTCTGCAATATGAAATTCTCCAGTGCCAGCAGTGTCCAAACACACATTGTTCATGTTCATATGGATGATATGATAGCTAAAAGAGCTTCTTTAAAACTTGCTCTTCCCATTACCGATAGTGATAACATTCAGAAACAGTTGATTGAAACTACTCAAGCACTATTAGATGATACGACAGCTAAAAGAGATGCTTTAAAACCTGCTCTTCCCCTTACCAATAGCGATAACATTCAGAAACAGTCGATTGAAACTACTCAAGCACTATCATCATCGTCTGAAGATAAGTCAATTCAACCAATTCAGGCAACTCAACAATCTGATAATATCGCAAGTAATGTTATGACCAAAGCTGATAAAAAAGCTATTGAAAGAATTAAAAGGAAGGAAAAATTAAAGGAATTACAACGTATACATTTGGAGAAACATCAAATTATAAAGAAGAATCTATTGTCCTATAGTAACAAATCTAATCAAGATATTTCGTCACTTAGTACTGCTGCATTAAATATGACATCAAAAGCAACTACCTCAGTTCCTCCTGTTGAACCAACTGTATCAACTGGATTACCAACAACTTTCAAGCCCATCGTATCAGCTAAATTTGGAGACAACAGTTCAGTCCCTTTAGCCACTGGATCAACAACTTCCACGACTGCTGCACCAAGTGCTGAATTCGGAAATAATAGTTTAGTTCCCGTATCTATTGGATCAACTATTGTACCAAGTACTAAAAATAACCCTTCAACTCCTGTATCTGGATTAACTAATAATTTCCTAAAAACTTATGCAGGTCCTTCAAAAGTTAAGTCATTTAAGGAATATAAATCTAACTCAGCTTCAACATTAAACAGATCTGTAATGAATGAAAATCAATCTAGAACAACACCTGCATGTACTTTACCTTTAGCAACTGTACCTTTATCAACATTGCAAGGTGCTATGACACAGTCTTGGAAAAGCAATGACATTATAAATACGAATTTTGAATTAGGAAAcagttacaattataattattcatgtCCGTTATGTGCGCTACAATACCCAACCTTGATGTACTTTCACGCTCATCTCAAGTATGCTCATGCACATGCCATTCGAACTGATAAACTGAACATACCACAGATTAATCAGGCTCACAGAGGTTCTATAATAGAATGTTTATTGTGCCCATGTATTTTCATTGATGAGATCACATATAGGAAGCATTTGAGGAACTCTCACACGTATTTTGTGTATATTGCAAACAATGAGATGGCGAAATTCAATAACCCCCCAGTATATAATCCTCCAGTAACACAGGCAAGCATTAATAGAGAAAGCACAATTCCTGAGACAATTACTGTAGATGACgatgataataacattaatattacacCAAATCAACAGACAACCGAAGTAACAGCCACGCTCAATCATACAGGACAAAACGATAAAATTGGTAAATTGAGAGTAAAGCCTTTTGCAAAGATCATTGAAAATTTAGCTAAGGATTCTGTGTTGTAA
Protein Sequence: MARVHSYERVVDAILVNRDPTFDTAIQNEVKIKEEPSDTTTNSDEETEDTSVKRCFSLIDHDYHRDKLSLKNDISCKDINNTENKPSSNSHSVRPNDVNKTINIERKRKKEIDNTSIQFKKQRFNQISNNENTNVSHATNNYREKRKLRHTNEKSVNEKLVNLYKCDVCFRKFPSFKNCTIHKQYYIKEKGTYCLLCKKLYKRSDKVAQEEIQSHLRKHVKRKYTYRCNFCCRSYKTKEVLQSHLFHTHKKLICFNNTIKRGTSKSENVNTSHKNDTLRTRANKKSLCSNNLVKPEKIDTVLTNEVNKSCDNNVTDTEESRIDKSSNSENSPTDKKLRQPTLLEFLIITGKKLDMKMKKIESELEALKERKESELDTFLNTQKEHPESVLPEGHNEQINSSPTKSDNLPKQNECSTLEQDMKHEKLNKPFVKLHADVEIMKSFLDNLSNTAVKDKRTEDRTSNITSYDRGIPYSLRSQNGVSYIVEVDPNIGMRKMKNVSKKSRFNIECSTEKKRNMIDSNKVDSKVDSKLRARFKCKEFTIFLTRCNEQPRNSYRISTTTDTTRNTFRETTQGNVTLDHESDVQNTVKLKDLEISLERLTTVPDIKITDVKTTDVKTADVKTTDVKTTDVKTTDVKTTDVKTTDVKTTDVKTTDPQTTDKEESVFEKHNYNYFLCKVCEKSFTSKLAKRLHIKSSHLAYMSSICDARYSSRHKLLQHYLSEHPLEQNQCCICYTLLSNYEELKQHLHVHCLKYIRRKDDQHSVDIEINCSLIKNDFKCSQCDNTFSSESSLMAHQSCCTVMKENQEDVMEGTSAHPKDSLKMQQKNTEKNILTCDESANLDDSHELLNKDCVEKPSEHQASLHEKESQINEVQQNVSDNNNLLIEKELDEKIVNQSQNSKKLLENSNSTTSNQNIVNALLDDVTGKMTYPCDICGKQFQNPKNLEAHVRTFNFTSDTCPMCGTGFGSKRLLQTHMTAAHVPQISKNYNFHCVFCNQGFFKKHELRPHILHLHGQQMLNTLTRNPNMRQEKSNETCTTAVCNICNLVFETHDRYVEHRMYYYENHTFECKLCEQTFQGMYMYHHHNKLVHYSEDKRKSYSYICDICNEGFNHESHFYSHNIHVHSNEVNLAEKEERSRLDHLTDTMEHVRNIFTKQKQNKQPSNEYTCQICQLKCIDMNHMEKHIEFYANDGHFKCDKCKRRCRTFSILNQHKKLTHYCRDIYNGYMCHICGEVLETIIALKCHEKHSHPDITGNNTDNGKNCTRISSSNVTQKITEHPYERKNDISNVTEYNCVFCNMKFSSASSVQTHIVHVHMDDMIAKRASLKLALPITDSDNIQKQLIETTQALLDDTTAKRDALKPALPLTNSDNIQKQSIETTQALSSSSEDKSIQPIQATQQSDNIASNVMTKADKKAIERIKRKEKLKELQRIHLEKHQIIKKNLLSYSNKSNQDISSLSTAALNMTSKATTSVPPVEPTVSTGLPTTFKPIVSAKFGDNSSVPLATGSTTSTTAAPSAEFGNNSLVPVSIGSTIVPSTKNNPSTPVSGLTNNFLKTYAGPSKVKSFKEYKSNSASTLNRSVMNENQSRTTPACTLPLATVPLSTLQGAMTQSWKSNDIINTNFELGNSYNYNYSCPLCALQYPTLMYFHAHLKYAHAHAIRTDKLNIPQINQAHRGSIIECLLCPCIFIDEITYRKHLRNSHTYFVYIANNEMAKFNNPPVYNPPVTQASINRESTIPETITVDDDDNNINITPNQQTTEVTATLNHTGQNDKIGKLRVKPFAKIIENLAKDSVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -