Sinv003820.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Solenopsis invicta
Gene Symbol
-
Assembly
GCA_016802725.1
Location
NC:3061458-3065441[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8 7e+02 0.7 0.2 1 8 103 110 103 112 0.88
2 16 1.1 96 3.4 1.9 1 23 383 405 383 405 0.92
3 16 0.058 5.1 7.4 0.9 1 23 413 436 413 436 0.90
4 16 3.6e-06 0.00032 20.7 2.5 1 23 442 466 442 466 0.93
5 16 2.9 2.6e+02 2.1 6.8 1 23 547 569 547 569 0.92
6 16 0.0014 0.13 12.5 0.4 1 23 576 599 576 599 0.92
7 16 0.00013 0.011 15.8 1.8 1 23 605 627 605 627 0.97
8 16 0.31 27 5.1 5.0 1 23 633 655 633 655 0.97
9 16 4.5e-06 0.00039 20.4 2.5 1 23 660 682 660 682 0.97
10 16 0.053 4.7 7.5 1.6 1 23 695 718 695 718 0.95
11 16 0.00029 0.026 14.7 3.5 1 23 734 757 734 757 0.95
12 16 9.8e-05 0.0086 16.2 0.5 1 23 766 789 766 789 0.98
13 16 0.0051 0.45 10.8 3.7 1 23 794 816 794 816 0.98
14 16 0.00012 0.01 15.9 2.4 1 23 822 844 822 844 0.98
15 16 0.0001 0.0091 16.1 2.2 1 23 850 873 850 873 0.98
16 16 0.00041 0.036 14.2 0.6 2 23 879 900 878 900 0.96

Sequence Information

Coding Sequence
atggaAAATACTACATGTCGTCTTTGTGGCATTAAATCAGAAATTgagcatttaaaatatatctttgatGAAACGGCTAATTTGGAGCAGATAATAAATGAGACTTTACCAATtaagGTCTCACAAGATGATCATTCCGAATATATATGTTTAGActgttataataaagttatcagtcattatgattttattcaaaatgtattgACGAATTCAGAGAATAATGAAGCAAAAACCACTTTCTTGGAGGTCAATAGAAATGAGAAATTGGACAGTATAATAATTTCTAAGATACAAAGTGACATGATATATTCTTGTCCAAATTGCaacacaaatttaataattataacgaaCAATCCTGAGGATAACAATTATGAGTTTCAAATTTCATTAGCTGCTGTAgatcatttaataaaatcagatgAACAAAATGTCCAAATGCTTGTAGACCCAATAGAATTTGTTAACGTCTATACACAGCAAGCAAGTATAGAAGATGAGTTACATGAATCATCATTGAATAATGACATCAACGAGGATGCATCAAATGACAAACAAAGTATCAATGAAGTGCATGGGAGCTCACAAAATGATATgaatcattcaaatttttacattacatcaCAAGAAACTCTGACTGACATGTCATGTAAACCACTCAAAGGTAACAAGAGAAAGCTTCAAGAAAATACTTTTACTGAAACAACTGATGGTGATACGCCTGCTAAGTTATACAAACTACAAGCAAAATTAAACGAAATAGAACAAAATGTTGATGAATTGGACAATGATCATAATAAATCAAGTATAAATGACTTCATAACAATTCAACCAATAAACAATGGTGTAGAATATCTCTGTGAAGAAGTAAACAAAGAGAAATATAGTACAGAATACACAATGGAAAGCAAATGCCTCAACAAgaatcttattaaattaaatgcaagGAATCAAGATGAATTGAAGATGAATGATTATGATATGTTGAATCTAGCTGATTTGACATTCCAACCAGGAGACAATGAGGTAAAATGCACAACTAGCGATGTAGAAGTTAAAGATTCCAATATAATGGACATGATTGAAACTGAAGAAGAATGTATTAACAACGATACGAATGCCATTGGCAGTTCAACACGTAGAGTAAGGCATGTATGCAATTTGTGTGGAGCTCGTTATTTTTCCCAGCTAAAATATGAATTTCACATGGAGAGACACAAGTTAAACAAAATAGATAAATACATTTGTATAACATGCGATAAAGTGACTAAAAATGAAAACCAATTGTGGGAGCACTATCTCCACACGCACAAGAGTCCGACACAATATACCTGCTTGGATTGCGACAAAACATTTGTGAATAAACCAAACTTGTTTCAACATCAGAAAAAATTTAAGCATACCAAATACAAAACTATATTAAATATTCCAATTATTCCAACAATTCCAATAGATATGGACAACAATCAGACACAGAAGGTCATTATAAAGCAGAAGCACAGAAGATGCACTATCTGTAGAAAACTGATAAAGAATGTAGATCCTAATGCTACCAACGATGTATTGACGTGCGATTCGTGCGAAGAAGCCAGCACATATCTGATGGTTGGGAGTACAGCGAAAATGATTACACAGCGGCAGTATCACTGTTCGAAATGCCGTAAACACTTTATGCGTCGGGAGAGACTTGAGTTCCACGAGATGCGACACAACGAAAACATGGATGAGTTTATCTGCAGTACTTGCGGTAAGGAGTTCAGCGGGGAGAATTCTTTGTACGAGCATTATCTGTTCGTGCACAAGGGGGTTAGACCACATATTTGCGAAGTATGCGGTAAGTCGTTTCAGCTGAAGGTGCGATTGAAGGAACACCTTAGAAAACACACGGGTGAGAAGCCTTATCAATGCGAGATATGTGGTCTGCGTTGTATGACTACGCACGCACTGAAATTCCATAAGAAGTCTCATCTCGCGCATCGCCACACTTGCGAGATATGTAACAAATCGTTCATCAAGAAACAGAATTTGAATGAGCATCTGGAGAAGCACTGGAAGAAAGACAAGAATGTATCACTGCCTCGAAAATTCACATGTTCCATGTGCGATAGCGAGTTACCGACTTTTCGCATGTTGAGACATCACATGACTCAAATTCATCAACTCGACTGTCAAGACCCTTTGATAATGAAACAAAAACCATTACACGAATGTGACGAGTGTCAGGAGAAATTTAAACATCAAATGTCGCTCAAAGCGCACAAGGAGAGAGTGCACGAGGGTAAAATTATACCTCGTATATTTCAATGCGATATATGCAAAATCGAATACAGAGTCAAGCAGATGCTAATAAATCACATTAGGAGCAAACACACCGAGAAACGATTCAAGTGTATGCAATGCAGTAAGAGATTCGCGGATGTTAAAACGCTATATCACCACGTCTCGCGACACATTGGAAGGAAGCCGTTCACCTGCGAGTACTGCAACATGAGTTTCAGACGAAAAGACGCTAGGGACATACATCGCCGTAAACACACAAACAGTCGACCTTACCAATGCACAGATTGCGACGAGTCCTTCACTAACTACACCAGTCGCTCAAATCATCGCAAGAAGGCACACGGGGACAAGGAGGTTGAGTGTCCGGAGTGCGGACAGAAATGTAGCGATAAGCAAGAAATCAGAATTCATTTGAATAATCATCTTGGCGAAAAATTAGATAAGTTAAAAACCCCATAA
Protein Sequence
MENTTCRLCGIKSEIEHLKYIFDETANLEQIINETLPIKVSQDDHSEYICLDCYNKVISHYDFIQNVLTNSENNEAKTTFLEVNRNEKLDSIIISKIQSDMIYSCPNCNTNLIIITNNPEDNNYEFQISLAAVDHLIKSDEQNVQMLVDPIEFVNVYTQQASIEDELHESSLNNDINEDASNDKQSINEVHGSSQNDMNHSNFYITSQETLTDMSCKPLKGNKRKLQENTFTETTDGDTPAKLYKLQAKLNEIEQNVDELDNDHNKSSINDFITIQPINNGVEYLCEEVNKEKYSTEYTMESKCLNKNLIKLNARNQDELKMNDYDMLNLADLTFQPGDNEVKCTTSDVEVKDSNIMDMIETEEECINNDTNAIGSSTRRVRHVCNLCGARYFSQLKYEFHMERHKLNKIDKYICITCDKVTKNENQLWEHYLHTHKSPTQYTCLDCDKTFVNKPNLFQHQKKFKHTKYKTILNIPIIPTIPIDMDNNQTQKVIIKQKHRRCTICRKLIKNVDPNATNDVLTCDSCEEASTYLMVGSTAKMITQRQYHCSKCRKHFMRRERLEFHEMRHNENMDEFICSTCGKEFSGENSLYEHYLFVHKGVRPHICEVCGKSFQLKVRLKEHLRKHTGEKPYQCEICGLRCMTTHALKFHKKSHLAHRHTCEICNKSFIKKQNLNEHLEKHWKKDKNVSLPRKFTCSMCDSELPTFRMLRHHMTQIHQLDCQDPLIMKQKPLHECDECQEKFKHQMSLKAHKERVHEGKIIPRIFQCDICKIEYRVKQMLINHIRSKHTEKRFKCMQCSKRFADVKTLYHHVSRHIGRKPFTCEYCNMSFRRKDARDIHRRKHTNSRPYQCTDCDESFTNYTSRSNHRKKAHGDKEVECPECGQKCSDKQEIRIHLNNHLGEKLDKLKTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01354855;
90% Identity
-
80% Identity
-