Sinv011924.1
Basic Information
- Insect
- Solenopsis invicta
- Gene Symbol
- -
- Assembly
- GCA_016802725.1
- Location
- NC:5576166-5583422[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.3e-05 0.0073 16.4 3.0 1 23 183 205 183 205 0.99 2 12 1.3e-07 1.1e-05 25.3 0.4 1 23 211 233 211 233 0.98 3 12 0.0031 0.27 11.4 1.9 1 23 258 281 258 281 0.96 4 12 0.0076 0.67 10.2 0.6 1 23 287 311 287 311 0.96 5 12 5.2e-06 0.00046 20.2 0.9 1 23 316 338 316 338 0.96 6 12 0.013 1.2 9.5 5.1 1 23 350 374 350 374 0.90 7 12 0.0023 0.2 11.8 2.6 1 23 376 398 376 398 0.97 8 12 4.2e-06 0.00037 20.5 0.2 1 23 404 426 404 426 0.96 9 12 3.7e-06 0.00033 20.6 1.4 1 23 432 454 432 454 0.98 10 12 0.0071 0.63 10.3 0.4 5 23 469 487 460 487 0.79 11 12 0.0066 0.58 10.4 7.2 1 23 493 516 493 516 0.94 12 12 0.0018 0.15 12.2 1.8 2 19 519 536 518 539 0.94
Sequence Information
- Coding Sequence
- ATGTTTGTACTTCACAAGAGGACACATCAAAAGACGCAGCAACAAACGGTGGACTTGACTCAGTTTTTAACAAATGACGAGAGTCAGGTGATGCACATAGAAGATGCAGTTCAAGATGAGTCGCAGTACAATTCGCAGGAGACTTTTCAGCTTGGAGAACCTATTATTCTCGAAGAAGCAGATATGCTATTTAgTGTGGATCAGGAGGCTGCTAATTATTTCATGACCGACTCCACATTTAGCGTGCCGATCATCTTAAGTACAGAGAGTCTTTCGGATACTTTCGGTAACGCTGCCATCGAGGCGACGAGGGAAGACTCGAGCGAGGTGCCGACGATCCTACAAAACGACATCAGTTCGCAAGAAGACGCCTCGAGCCAGTCTGAACATCCTAACGCTTCGTTAACGGACAACGAGTTTTCCCTGGCGGACAATGAGCCGCCTCTAGAGGACAACGAATCCTCTCTCGAGAACAACGAGATATCCCTCCAGGACAATTCAGTCGATGAATCAAAAAATGGCATCAGTCGAATGCAGAACTTGAAGTATAAATGCGGTTATTGCAACAAACAGTTCGCGAAAAAATTCTACTGGCAGCAGCATGAACGTTCTCACACTGGAGAAAAACCTTATCAGTGTGTAGTATGCGGTCGTGCATTCGCACAGAAGTCAAATGTAAAGAAACACATGTCCTCGCACAAAGTATGGCCTGGTACCGCTATTCATTCGCTACCACCAGAGGCGCCTCCAGACGGAAGTATCGATCGCACGTATCATTGCCAGTTCTGCAAAGAGACGTTTGACTCGTACAAAGCTCTGAAAGGCCACCTAATTGTCTCGCATCTGGCACTGAAAGTATATAAGTGTGTGCAGAGTAGTTGCAGCATGATGTTCTCGGATCTGGACGAATTCCTGGAGCACACACGCAGCCACAAGTGTTCGGAGTATCGATGCCATGTATGTGGCGAGGTATTCAGCACTCTTACAGATCTTGGTCGCCATCAGTACGACCACTCTATCCAGAAGCAGAAGACCACAGAGAAGTATTATTGCTGCACGACTTGCAAGTCGTCGTTCTCAAATCTGGAGGCGTTGCAGCATCACAAAGAGACTACTACGCACAATTACGCGTGCCTGCATTGCGGCAAGAGCTTCCTCATCGAAAGGTTTTTACGCCGTCACCTCAAGACCCATTCGGCATCAGCGAGATTTGCTTGCGAGGATTGCGGCAAAGCTTTCAAAACTGAGCAGTACCTGGCTAATCATAAGCTGATACATAGCGAGGAGACACCTTTCACATGTCCGcATTGTCCGGCCAGATTCAAACGGAAAGATCGACTGGGTCGGCATATGCTGATCCATGATCTAACGAAGAGACTCAAGTGTCCGTTTCGCAACTACTTAGGCTGCATGAGCGAGTTTTCGCGGCCTGACAAGCTCAAACGGCACCTGCTGACGCACAGTAATGTCAAGCGTTTCAGTTGTAGTCACTGCAATCGCAACTTCCACCGAGCGCAAGCTCTCAAGCATCACGAGATGAATAAGCACAGTCTTAAGTGCGACATCTGCTCCCACGCTTTTAAGACTAAGGAGCAGCTGGTTACCCATAACTGTGAACAATCAAATGAGACCAAGAAGCATTCGAGCTCGCAGCTACCGAAAAAGGCGTCCGGATCATTTAAGCCGAGGAAGCCCACCCCAAAGAGACAAACGTTATCAAAGACTGCAATCCCACTTGCCGACAAAGAGAAATTTGAAAAGCTTAAGGCTGATGAAATAGaaagaaaaGTCGCCTTCGAAACATTCAAACCTGGCGATTTTGACGAGGAATCCAGCAAGAAAATGGGAAATGTTTCTCCCGTCTCGAAAGCGGTCGAGTTAACCGGCGATGAATTAAATGAGCAAGTCGACTCGCCAGTTATGGATCTTGAGAACGATTTCAAGCGCAACATGGAATTCTACTCGCCCCACACAAGCGAGTAG
- Protein Sequence
- MFVLHKRTHQKTQQQTVDLTQFLTNDESQVMHIEDAVQDESQYNSQETFQLGEPIILEEADMLFSVDQEAANYFMTDSTFSVPIILSTESLSDTFGNAAIEATREDSSEVPTILQNDISSQEDASSQSEHPNASLTDNEFSLADNEPPLEDNESSLENNEISLQDNSVDESKNGISRMQNLKYKCGYCNKQFAKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPPDGSIDRTYHCQFCKETFDSYKALKGHLIVSHLALKVYKCVQSSCSMMFSDLDEFLEHTRSHKCSEYRCHVCGEVFSTLTDLGRHQYDHSIQKQKTTEKYYCCTTCKSSFSNLEALQHHKETTTHNYACLHCGKSFLIERFLRRHLKTHSASARFACEDCGKAFKTEQYLANHKLIHSEETPFTCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRNYLGCMSEFSRPDKLKRHLLTHSNVKRFSCSHCNRNFHRAQALKHHEMNKHSLKCDICSHAFKTKEQLVTHNCEQSNETKKHSSSQLPKKASGSFKPRKPTPKRQTLSKTAIPLADKEKFEKLKADEIERKVAFETFKPGDFDEESSKKMGNVSPVSKAVELTGDELNEQVDSPVMDLENDFKRNMEFYSPHTSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00110004;
- 90% Identity
- iTF_00016851;
- 80% Identity
- -