Basic Information

Insect: Solenopsis invicta
Gene Symbol: mecom-b
Assembly: GCA_016802725.1
Location: NC:26247515-26330449[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0076 0.67 10.2 0.7 2 23 309 331 308 331 0.95

2 9 0.42 37 4.7 0.1 1 23 338 361 338 361 0.93

3 9 9.4e-06 0.00083 19.4 1.2 1 23 367 394 367 395 0.93

4 9 3.6e-06 0.00032 20.7 2.6 1 23 401 423 401 423 0.95

5 9 2.2e-05 0.0019 18.2 5.0 1 23 429 451 429 451 0.99

6 9 0.00044 0.038 14.1 0.7 2 21 459 478 458 479 0.95

7 9 5.2e-09 4.5e-07 29.6 1.2 1 23 835 857 835 857 0.99

8 9 2.7e-07 2.4e-05 24.2 1.7 1 23 863 886 863 886 0.97

9 9 7.6e-06 0.00067 19.6 3.4 1 23 892 914 892 914 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0076	0.67	10.2	0.7	2	23	309	331	308	331	0.95
2	9	0.42	37	4.7	0.1	1	23	338	361	338	361	0.93
3	9	9.4e-06	0.00083	19.4	1.2	1	23	367	394	367	395	0.93
4	9	3.6e-06	0.00032	20.7	2.6	1	23	401	423	401	423	0.95
5	9	2.2e-05	0.0019	18.2	5.0	1	23	429	451	429	451	0.99
6	9	0.00044	0.038	14.1	0.7	2	21	459	478	458	479	0.95
7	9	5.2e-09	4.5e-07	29.6	1.2	1	23	835	857	835	857	0.99
8	9	2.7e-07	2.4e-05	24.2	1.7	1	23	863	886	863	886	0.97
9	9	7.6e-06	0.00067	19.6	3.4	1	23	892	914	892	914	0.99

Sequence Information

Coding Sequence: ATGAGATCCAAGCCAGTGGCGAGGAGACTAGCACAGGGAAGCAGCGACGAAGGCGAGTCGACGTCGGGTGCGACTGGCGGGGGTGGAAGTAGCGAAAACGCAGAAATGGAGGAGAACGGATCGACTCGCAcgagcagcaacagcagcagcaacaatcCCGTTTACAGAGATATGAAGCTACATCAGACCGGTGGCGAAATTCCACAGGAGTATAACCCCCAATCGCGAAGCGCTTATCAGCAACGCGGATACTCGCCGGGGATGGACCGACAACGGAATTACGAGAAGGAGCAACTTCAACCGTCGCCGTCTTCTAGAGACGAAGAGAGGAAATTGTCCTGGGAGTACAGCGAGAAGAACACGCGAAAAGAATACTCTAGGTCACGGGATTACAGCAATACGGAATACCAGGATACGATAAAGCAGGAGGCCAAGGATCACTCGAGTCGCGAGTGGGTGTCACCCGTCCCGGAAGTCGAAGTCGGCGGTTCGGCACCCGGAGGCCCGTACGTTCGTGCACGCAAAGACATCCCTCGTGGCGCGAGATTCGGTCCGTTCCTCGGCAAATGGGCGAGCGAGCCTTTCAACCCCCGTTACGCGTGGGAGGTTCGCATAGCAGGCAGCGGAGTAAGAGGCTGGTTGGATGCGTCTCACGAGACGAACAATTGGTTGAAATATATTCGAAGTACTGCTAGCTCACACGCAGTGAACATGCGTCACGTACTCATCGGCGGTCAGATGGTGTACGAGGCTGTTCGCGACATTGCAACGGGCGAAGAGCTTCTTCTGGGTCTTCGAGAACCGCTTCAGCTGCAGGACATGCTGGGTGAGAACACGACCGAGGACAGAAGCGATCGAGAAACTGCCTCTCAACACAGTGGAACTGTCGATGAGGACAAGGAGGACGAGGAGGAAGGAGAAACAAGGTGCACTGTCTGCGACAAGCCGTTCCAAGATATCGAACTATTGGACAGCCACCTGGTGACTTGTCACAGATATCCAGCGGAACAACATCGTTGCGACAGTTGTCCCCGTGCTTACGCCTGGCGGCCGCTTCTGGTGCGACATCGTGCCATCGTCCACGGTGATCTTAGAAATTATCCCTGCGAAAATTGTCCGAAGTCGAACGTTCGGCAGGTCTTCACGGACCCATCAAACCTACAACGCCATATCAGAACGCATCACGTGGGCGCGAGGAGCCACGCTTGCACGGAGTGCGGCAAGACCTTCGCGACCAGTTCCGGCCTAAAGCAGCATACTCACATCCACAGCAGCGTGAAGCCCTTCCAATGCGAGGTCTGTTTTAAGGCATACACGCAGTTCTCCAATTTATGCCGACACAAGCGCATGCACGCCGACTGTCGCATGCAAATCAAGTGCGTTAAATGCGGACAATCCTTCAGCACGGTGACATCGTTATCGAAACATAAGCGATTTTGCGACTCCACAACTCCAACCGGTCCGCCTGGAACCATGCCTCAATTACCGACGCCAGCGACGAGCCCATTTCTAGTATATCCACGACCTCCCGTCAGTCTACCAGGCGGTTTGCCTTTTTATCCGCCTAGTTTGATGGGTCCTTATCCGGGAATTTTTCCGAACGCTCCGAATTTTCTGAACACGCCTCTGCTTTTCCCACCGAAGATTGAAGAGGTCGAGAAAAGGAGCGACAGTCCTAGAAAGGAACGTTTCACTCCTCCGAGAGTATTGTCGCAACACAATAAGGTCTCTCCTTCCACGGCAGAGGAAGCCACCTCTACATTTAGGCCATCTCCAGCTAGACCTCCAGTTCAACCGACGCCGGAAAGTGACGACGATCTTTCAAAAAGAAGAGAATCGGCTAAAAGTAATGAACGAAAAATGGAAACCGAGAGTACTTCAAAGGAGGAGACGACCGAGCAACCGTTGGATCTAAGGGTGCAGACTAAGAAGCAGGACACTATTTCAAAAAACGCAAATAGAAAAAGTCGTACTCCGTCGCCAGCGCCAATACCAATGGAGGAAGCACCTACACCTCCTGATCCCCCGAAACCGGAAGAAGAGGTTGCCGCTCCACCACCGATGGAACTCGAGTCTAAGGATGTCCAAGGGAGTAGTCCACACTTGAGGACAAGCTTACCAATCGAACACCCGCCGACCAATACACCGCCGCATATGGCTTATCCCAGACCGATACATCCAATGTTCCTTGAAACGATGTATCGTAGTCCCGCAACTTTTCCGGGATTTCACAGCGCACCTCCACCTCCCGGTGGAGCTACTCCAGAATCTAGGCTAATACCTCCACTTCCACCCTTTGCTCCACCGCGCGGGCTTCCTTTTTTAGGCTCGCTTATGAACGGGCTCAGCGGCGCTAGACCAGGAGGAGGATTTGATCTGCTTGCTCGGCCGCCGCTGAGCGCGTTCCCCGGTGTAAAGCCGTTTCAAGAAGCCGTAATGTCGccccatcatcatcatcatcatcatcaccatcatcacgTCCACGGCAAAATGAAGGATCGATACTCCTGTAAGTTCTGCGGCAAAGTGTTCCCTCGTTCGGCCAATCTAACGAGGCACTTAAGGACTCACACCGGTGAGCAACCGTATAAGTGTAAGTACTGCGAAAGGTCCTTCAGCATCTCGAGTAATCTGCAGAGACATGTCAGGAACATTCACGATAAGCAGCGGCCGTTCAAGTGTCCGCTTTGCGAAAGGTGCTTTGGACAACAGACCAATCTGGACAGACATTTGAAGAAGCACGAGGCTGATGACGGCAGCGGAGTGGTATCGGTCGCCGACTCACCTGGAAGCAGTAACGAGAACGAGCGGGAGGACACCTACTTCGACGAGATCAGGTCTTTCATGGGCAAGGTTACTTACAGCGGTGAGAGCGGCTACGGGCTGTCGCATCACCCGGCCTATATTCCCAGTCGGCTGCACGAGATGAACGAGTCCAAGAATATGGAGGTCGAGTATGATGAGGACGAGGACAGCGAGGAAGGTGCATCTCCTTTGGAGGAAACGGATGGATTGTCGCCGATCGAGGCCAAGGAATCTCCGTCGCCCTCACAATATGACCTGAAGCTGAGGGAGAAGCAGGAGCTGCTCAATAATAATACCGCGGAACCAGTGATCGAGATTTCGACATAG
Protein Sequence: MRSKPVARRLAQGSSDEGESTSGATGGGGSSENAEMEENGSTRTSSNSSSNNPVYRDMKLHQTGGEIPQEYNPQSRSAYQQRGYSPGMDRQRNYEKEQLQPSPSSRDEERKLSWEYSEKNTRKEYSRSRDYSNTEYQDTIKQEAKDHSSREWVSPVPEVEVGGSAPGGPYVRARKDIPRGARFGPFLGKWASEPFNPRYAWEVRIAGSGVRGWLDASHETNNWLKYIRSTASSHAVNMRHVLIGGQMVYEAVRDIATGEELLLGLREPLQLQDMLGENTTEDRSDRETASQHSGTVDEDKEDEEEGETRCTVCDKPFQDIELLDSHLVTCHRYPAEQHRCDSCPRAYAWRPLLVRHRAIVHGDLRNYPCENCPKSNVRQVFTDPSNLQRHIRTHHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTTPTGPPGTMPQLPTPATSPFLVYPRPPVSLPGGLPFYPPSLMGPYPGIFPNAPNFLNTPLLFPPKIEEVEKRSDSPRKERFTPPRVLSQHNKVSPSTAEEATSTFRPSPARPPVQPTPESDDDLSKRRESAKSNERKMETESTSKEETTEQPLDLRVQTKKQDTISKNANRKSRTPSPAPIPMEEAPTPPDPPKPEEEVAAPPPMELESKDVQGSSPHLRTSLPIEHPPTNTPPHMAYPRPIHPMFLETMYRSPATFPGFHSAPPPPGGATPESRLIPPLPPFAPPRGLPFLGSLMNGLSGARPGGGFDLLARPPLSAFPGVKPFQEAVMSPHHHHHHHHHHHVHGKMKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSGVVSVADSPGSSNENEREDTYFDEIRSFMGKVTYSGESGYGLSHHPAYIPSRLHEMNESKNMEVEYDEDEDSEEGASPLEETDGLSPIEAKESPSPSQYDLKLREKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01407591;
90% Identity: iTF_01261975;
80% Identity: -