Sinv006645.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Solenopsis invicta
Gene Symbol
ZNF484
Assembly
GCA_016802725.1
Location
NC:20384594-20389198[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00061 0.054 13.7 0.5 2 23 169 191 168 191 0.94
2 15 0.01 0.9 9.8 3.4 1 23 370 392 370 392 0.97
3 15 0.41 36 4.8 5.8 2 23 398 420 397 420 0.95
4 15 0.00073 0.064 13.4 1.1 1 20 430 449 430 450 0.93
5 15 3.4e-05 0.003 17.6 1.5 3 23 461 481 459 481 0.97
6 15 0.00022 0.019 15.1 0.8 1 23 494 516 494 516 0.98
7 15 0.05 4.4 7.6 1.8 1 23 524 547 524 547 0.91
8 15 0.00016 0.014 15.5 2.8 1 23 553 575 553 575 0.98
9 15 0.00013 0.011 15.8 2.7 1 23 578 601 578 601 0.94
10 15 0.00019 0.017 15.2 0.7 1 23 615 637 615 637 0.98
11 15 0.0074 0.65 10.2 3.4 1 23 643 665 643 666 0.97
12 15 0.00047 0.041 14.0 3.0 1 23 670 692 670 692 0.97
13 15 3.6e-06 0.00032 20.7 2.2 1 23 697 719 697 719 0.98
14 15 4.7e-07 4.1e-05 23.4 1.8 1 23 727 749 727 749 0.99
15 15 5.8e-05 0.0051 16.9 0.7 1 23 755 777 755 777 0.99

Sequence Information

Coding Sequence
atgaatacaaaaataattaaggtTGCACTTATTTCTAATGATAAGTTCGAAATATGTCGTTTGTGCGGAAAAAAGTCTTTGAATTGTATTTCAATATTCGAGGACAGAAATAACTATATTCTCGAAAAAATCAGTAGATGTCTGCCAATTATTGTTTTTCCAAATGATAATTTACCCTCCAGCGTGTGCAGGCGTTGcctgaattatttaaatattagttgCAAATTGATTCTTACTGCAATAGAGGTGGACAAACGACTACGTATGCAATTAGATCTAAAGCAGAAAGTCTCTGCTAACTGCAAAAATAAAGGTAGTGTCTCTACGAATAAAGATACTGTCTTTACAAATAAAGATACTTACTTTACAAATAAAGAAGTTACGGCATCTTGTGACGGACCTGTAATATCTGCCATAGCTGGCTCAGTTGGATGTGATTTGTGTGACttgcattttcaaaatatagatATAGTTGACACGAACCAGATTCGTTTTTTTAAGTGGAAATGCAGCCTGTGTGATAGCAGCTTTGACAAATCTAGTGAGCTGATAGCTCACAAGTCATCAAAGCATAATGGTAACATTATGGTATGCAATAAATGTCGATGCACATACGGTCAAAATGTAAATACAGATGAgatgaataataaacaaaataccAAACGAAAAATTATCAATGAGAAAGTTCAGAATAATCAGATTAATGCGCAAGAAATTATGAATAAGACgaataataaacagaaaattactaataaaaatgttCAGAATGATAAACAGGAAATTACAAGTGAAAAGAACATCCAGAATAATCAGCAAACGGAGCAGGAGActattgacaaaaataattacgaaagaATCGTTTCAAAAAATGACGAAATTGGAGCATTTATCAACTTGACAATGGATGAAaatgatattgcaataaaagataaaaatgtagATTTTGATAAAATGCATGTCTCAATAGAAGAAACTGATGACAGCTTTGATTTAGATAAAATCATGGACAATGATGACACTTCTGATTCAGAAACAGATAGAATCGTAGAGCAATATAAGAGAATTTTTGAACGGATCAAAACTACTCAAAATGAGCAACTGAAACGATTCTTTTGCGACACTTGCAAGATCTTTTTTGAGAGCGAGCGACATTTCAATGCTCATAACAGGATACACGAGGAAAAAGTTGTTACTTGTACCAAATGCTCCACAAAATGCTCGTCTGTGCATGATCTGTTTCTTCATAAACGTGAAAAgcacaatatgtataaaaattcatgTGTAAAGTACGCGTGCAGTAAATGTGGAAAATTCTTTACGCACAGCTGGACTTGGGAATCTCACAAGGAAGATCAGTGCTTCAAAACGAAAAAGAAGTTTTGCAAATATTGTAACGTGGTATTCCCGACACAACTCAAACTGACACGCCACTTAAGgAGTCACAAATGGGAGATGCTCAATGATCCGGATGTGACTGTATACAAATGCGTTTCCTGTCCCAAAGAATTTATCGACAAAGAATTTTACGAAAAGCATAGAAATGTACATGATCCGGAATGTTGGAATAAATACCGGTGTGCCACATGCAAGAAACCGTTTAGGGATGGGATTCGATTACACGAACATCACATGGCAGTTCATCAGAACATTAAGCCTTATCAATGCCATGTCTGCGGACGTTTTTTTCTGCGCTCGCAAAGTTTGAAAATACATAGTAGAATTCATTCTGGGCACAATTGCAATCGTTGTaacaaagtttttgaaaaaagagTGGATTTAACGAAGCATCTGCAAGAAACCCACGGTTTGAAGCTGCCTAGTAAACCCAACTTGAATAAAGATTACATCTGTAGATACTGTGGCAAAAAGCTTAGATCGTATATATCGTTGACAGATCACGAAAGAATTCACACCGGAGAAAAGCCATACAACTGTTCGAAATGTGAACGGTCCTTCCGGAGTTATACTGCTAGATGGACTCATCTACAGCATCATTTGAAAAGCATGTTTGTGTGCGAACATTGTGGAAAATCCTATAgGAGTTACACTGCTAGATGGGCTCATCTCCAACATCACCTGAAGGGAATGTTCGTGTGCGATCATTGTGGAAAATCCTATAGTTACAAGCGAAGTTTAGCTCTGCATACTTTAACTCATTTGCCGATGGAGGATCGCAAGTatgaatgtaatatatgtaagaaAAGATTTATGAGGAACGCTCATCTGATTATTCACCAACGTATTCATTCCGGAATACGACCCTATAAATGCGATGTGTGTTTGGTAAGTTTCACACAAAAGGGCGACATGGTACGACATCGAATGCGACACTTTAACAAAGACAAacctgtaaaaaaaagataa
Protein Sequence
MNTKIIKVALISNDKFEICRLCGKKSLNCISIFEDRNNYILEKISRCLPIIVFPNDNLPSSVCRRCLNYLNISCKLILTAIEVDKRLRMQLDLKQKVSANCKNKGSVSTNKDTVFTNKDTYFTNKEVTASCDGPVISAIAGSVGCDLCDLHFQNIDIVDTNQIRFFKWKCSLCDSSFDKSSELIAHKSSKHNGNIMVCNKCRCTYGQNVNTDEMNNKQNTKRKIINEKVQNNQINAQEIMNKTNNKQKITNKNVQNDKQEITSEKNIQNNQQTEQETIDKNNYERIVSKNDEIGAFINLTMDENDIAIKDKNVDFDKMHVSIEETDDSFDLDKIMDNDDTSDSETDRIVEQYKRIFERIKTTQNEQLKRFFCDTCKIFFESERHFNAHNRIHEEKVVTCTKCSTKCSSVHDLFLHKREKHNMYKNSCVKYACSKCGKFFTHSWTWESHKEDQCFKTKKKFCKYCNVVFPTQLKLTRHLRSHKWEMLNDPDVTVYKCVSCPKEFIDKEFYEKHRNVHDPECWNKYRCATCKKPFRDGIRLHEHHMAVHQNIKPYQCHVCGRFFLRSQSLKIHSRIHSGHNCNRCNKVFEKRVDLTKHLQETHGLKLPSKPNLNKDYICRYCGKKLRSYISLTDHERIHTGEKPYNCSKCERSFRSYTARWTHLQHHLKSMFVCEHCGKSYRSYTARWAHLQHHLKGMFVCDHCGKSYSYKRSLALHTLTHLPMEDRKYECNICKKRFMRNAHLIIHQRIHSGIRPYKCDVCLVSFTQKGDMVRHRMRHFNKDKPVKKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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