Basic Information

Insect: Solenopsis invicta
Gene Symbol: -
Assembly: GCA_016802725.1
Location: NC:4870967-4876359[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.5 4.8e+02 1.2 0.1 1 9 352 360 352 374 0.68

2 12 7.2 6.4e+02 0.8 2.8 1 19 375 393 375 395 0.89

3 12 9.8e-07 8.6e-05 22.5 1.8 2 23 444 465 443 465 0.97

4 12 1.6e-05 0.0015 18.6 0.4 1 23 471 493 471 493 0.98

5 12 0.00029 0.026 14.7 2.4 1 23 499 521 499 521 0.98

6 12 0.00026 0.023 14.8 2.8 1 23 527 549 527 549 0.98

7 12 0.0002 0.018 15.2 1.3 1 23 555 577 555 577 0.98

8 12 3e-07 2.6e-05 24.1 0.4 1 23 585 607 585 607 0.98

9 12 0.0038 0.33 11.2 0.2 1 23 613 635 613 635 0.94

10 12 1.1e-05 0.00096 19.2 2.2 1 23 641 663 641 663 0.98

11 12 5.7e-05 0.005 16.9 0.9 1 23 669 691 669 691 0.98

12 12 1.9e-06 0.00016 21.6 2.1 1 23 697 719 697 720 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.5	4.8e+02	1.2	0.1	1	9	352	360	352	374	0.68
2	12	7.2	6.4e+02	0.8	2.8	1	19	375	393	375	395	0.89
3	12	9.8e-07	8.6e-05	22.5	1.8	2	23	444	465	443	465	0.97
4	12	1.6e-05	0.0015	18.6	0.4	1	23	471	493	471	493	0.98
5	12	0.00029	0.026	14.7	2.4	1	23	499	521	499	521	0.98
6	12	0.00026	0.023	14.8	2.8	1	23	527	549	527	549	0.98
7	12	0.0002	0.018	15.2	1.3	1	23	555	577	555	577	0.98
8	12	3e-07	2.6e-05	24.1	0.4	1	23	585	607	585	607	0.98
9	12	0.0038	0.33	11.2	0.2	1	23	613	635	613	635	0.94
10	12	1.1e-05	0.00096	19.2	2.2	1	23	641	663	641	663	0.98
11	12	5.7e-05	0.005	16.9	0.9	1	23	669	691	669	691	0.98
12	12	1.9e-06	0.00016	21.6	2.1	1	23	697	719	697	720	0.96

Sequence Information

Coding Sequence: ATGGCCGTCGTCGAGGAGTTTGATTATCTGTGCCGCCTATGCGCGTCCAAGACTGGCCTCCTGATGGGCCTGCCGATATTCGAGGCCGGCGATCAGATGCGCAACATCGACAAGAAGATAGCGGCCTGCCTACCGGTCCAGgTGTCGCTGACAGATCAGCTGCCCAAAGTGGTCTGTGAAGAGTGCGCATACAAATTAGATCAATTGTTTGATTTTCGTGAAAAATGTCTACTCACAGAGGAGATGTTCATGGAAATGTTGAAGGAGATTAGTAAAGAGAAGGTCGTGCACATATCAGAGCATGATTTGGCGAGCGTGAATAACATGGGCACAATTCAGAGAAACCTGAACAGCATACAGCTTGATAATGAGAATGTACAAAGCCATTCAGCTGTGGTTCATGAGGCTACGGAATCTACCATGCACACGATGCAAGTGATGGATGAAATGGACCTGGCTGGTGGCGAACAAGTGGTCACTCAGGAAGAAATGGCTCAGCAGGATGCAGATATACAAGGCATTGACTGTCTGGATGGTGACACTGTGCGAATGGTCGATGAGCATATTCGAGAGGTTTCAAACCATCAGATTGCAATGCACTTGGATAATGATATGACTGTAGTGGGAAACCTGGGTGGTGACTTGAgtcaattagaaataaattatgttacttCTATCAATCCTGAAGATCAGAGCCAGGAACAGATAGTGCattattgtgaaaatgtgagAAAATATGAGACAGATGCAATAAAGCAAGAATATCATAGATTGCAAGATAGATTAACAGAAGAGCCTCGGCATATAGTTCTTATCAAAAGTGACGTAGATAATTTTGTTTCCCCCCGAGCTGACACGGAAAGTGAAATAGAAGAGTCTTGCATGAATGAAAATGGAACTGGTGAACACGTGGACTCCGTGAACTTACCATCTACAAGTCAGATAAATGGCGTACCTTGCGAAATAATGGTTAAATACACGAAGAGGACAAAGCATGCGTTATTGGAATCTACGCTCAGCAATCCTACTGTGGACGAGACCGGTTCGCATTGGTACATGTGCCCATTTTGCAACGAGGCAGCTTTGGGAACGACCAATTTAGCCGCACATTTCGAGCAACATTTTTGCTGCTGTTCCTGCGGTTTATATTTCACTAGTGTCGAGGTATTAAATCTACATAAAGAGGAATGTGATGTATATAAAACCGAAACAGTTGATAAGGAGAAGAAGAACGCACAGTTAAACACAATAGTAGAGACACAAGAGAGTAATGATAATCAGGAAGGGCAAAAGAAACAATCGACGGTGAGGCGGAAGTGGACGGCGAAGGTGTGTACGGAATGTGGCAAGCAATATAAGTCGAATTACAAGTTGCAGGAGCATATGCGCAAGCATACGGGCGAGAAGCCGTTTCAATGTACGACGTGTGAGAAGGCGTTTCGCAGCAAGATCGGCCTCGCGCAACACACGGCCACGCATACTGGTCAGTTTGACTACAATTGCTCCACATGCGGCAAGGGATTCCAATGCAAAAGCTATCTCATCGTTCACCAAAGAGTGCACTCGGACCTGAAGCCGTACTCTTGCACCAAGTGCAGTCAGAATTTCAAAACGAAGCAATCTTTATTGGACCACGAGAATCGTCACCTCGGCGTGAAGCCGTATATGTGCGAGATTTGTGGCCGCGGTTTCATCACCAAGGGTCTTTGCAAGAGTCATCAGAAGATACACTCCGGCACAGACAATCGCCAGTACCCGTGCGCAGTGTGTAATAAGATGTTCGTCAGCAAGAGCTATCTGAATACACATTTGCGCATACACACGGGAGAGAAGCCGTATCTGTGCGAAGTTTGTGGCAAAGGATTCCTCACGCGGGTTGACCTCAGGATCCACTCAACTATGCACACCGGCGAAAAAAGCTTTAAATGTGAAATGTGTGGCAAGGTGTTTGCTCGACGCGCGGCGCTACGCTGCCATCGACGGTCGCACACGGGCGAGCGTCCTTACAGATGCGACGTCTGCAACAAAACGTTCACGCAGTTCAGCCCAATGGCGATTCACAAACGTCTGCACACCGGCGAGCGGCCATACGAGTGTGACGAGTGCGGCAAAGCCTTTGTGTCCAGGTCAACCATGATGTCTCACAGAAAGAAGCATCACGTCACGACCGCTGTACAAAAGGAAGCGTCTGTGCCACATAACGAAAATGCGGAAATCAAGATCACCCTCTCATCCGAGCCTATGGTAGTCAGAGGATCATACGAGGGAGTCGAAATAACTGCAGATTGA
Protein Sequence: MAVVEEFDYLCRLCASKTGLLMGLPIFEAGDQMRNIDKKIAACLPVQVSLTDQLPKVVCEECAYKLDQLFDFREKCLLTEEMFMEMLKEISKEKVVHISEHDLASVNNMGTIQRNLNSIQLDNENVQSHSAVVHEATESTMHTMQVMDEMDLAGGEQVVTQEEMAQQDADIQGIDCLDGDTVRMVDEHIREVSNHQIAMHLDNDMTVVGNLGGDLSQLEINYVTSINPEDQSQEQIVHYCENVRKYETDAIKQEYHRLQDRLTEEPRHIVLIKSDVDNFVSPRADTESEIEESCMNENGTGEHVDSVNLPSTSQINGVPCEIMVKYTKRTKHALLESTLSNPTVDETGSHWYMCPFCNEAALGTTNLAAHFEQHFCCCSCGLYFTSVEVLNLHKEECDVYKTETVDKEKKNAQLNTIVETQESNDNQEGQKKQSTVRRKWTAKVCTECGKQYKSNYKLQEHMRKHTGEKPFQCTTCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYSCTKCSQNFKTKQSLLDHENRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGTDNRQYPCAVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLRIHSTMHTGEKSFKCEMCGKVFARRAALRCHRRSHTGERPYRCDVCNKTFTQFSPMAIHKRLHTGERPYECDECGKAFVSRSTMMSHRKKHHVTTAVQKEASVPHNENAEIKITLSSEPMVVRGSYEGVEITAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01087395;
90% Identity: iTF_01354799;
80% Identity: -