Basic Information

Insect: Solenopsis invicta
Gene Symbol: -
Assembly: GCA_016802725.1
Location: NC:600581-605768[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00026 0.023 14.8 3.9 1 23 528 550 528 550 0.98

2 11 0.41 36 4.8 11.7 2 23 557 578 556 578 0.91

3 11 6.1e-05 0.0053 16.8 6.6 1 23 584 606 584 606 0.99

4 11 0.00042 0.037 14.2 1.6 1 23 612 634 612 634 0.95

5 11 9.1e-07 8e-05 22.5 1.8 1 23 640 662 640 662 0.97

6 11 2.7e-05 0.0024 17.9 1.1 1 23 668 690 668 690 0.97

7 11 0.0001 0.0089 16.1 1.1 1 23 695 717 695 717 0.96

8 11 3.4e-05 0.003 17.6 0.0 1 23 723 745 723 745 0.96

9 11 9.6e-05 0.0085 16.2 0.1 2 23 757 778 756 778 0.96

10 11 1.6e-06 0.00014 21.8 2.0 1 23 844 866 844 866 0.97

11 11 2.6e-05 0.0023 18.0 4.6 1 23 876 898 876 898 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00026	0.023	14.8	3.9	1	23	528	550	528	550	0.98
2	11	0.41	36	4.8	11.7	2	23	557	578	556	578	0.91
3	11	6.1e-05	0.0053	16.8	6.6	1	23	584	606	584	606	0.99
4	11	0.00042	0.037	14.2	1.6	1	23	612	634	612	634	0.95
5	11	9.1e-07	8e-05	22.5	1.8	1	23	640	662	640	662	0.97
6	11	2.7e-05	0.0024	17.9	1.1	1	23	668	690	668	690	0.97
7	11	0.0001	0.0089	16.1	1.1	1	23	695	717	695	717	0.96
8	11	3.4e-05	0.003	17.6	0.0	1	23	723	745	723	745	0.96
9	11	9.6e-05	0.0085	16.2	0.1	2	23	757	778	756	778	0.96
10	11	1.6e-06	0.00014	21.8	2.0	1	23	844	866	844	866	0.97
11	11	2.6e-05	0.0023	18.0	4.6	1	23	876	898	876	898	0.97

Sequence Information

Coding Sequence: GCGCGAAACGCGGAAAAAGTGCGCGGAGCAGAAGTGAGAGTGTGGGAGCGCCGTGGGAGGAAGGTGGAGGTTGTCTTTCAAGAGACCCGTGGACGCCGCTCTGTTCCGAAAAGCCGAAGAGCCGAAGCGAAAATCACTTATGGTCTCCAACACATAGAAGAGTCGTGCGGCGTGCTTTTTTCTATTGGTGTACCAGTGGCGCGGCAACGATACGAAAGCGACTCGGTAGATCGGCGGAAACGCGGCGAATCGGCGTTTCGAAAGGGAAAAAGGAGGAAGCTTCAGCCGCCTGCtggtgctgctgctgctactactgctactgttgctgctgctgctgctgttgctgctacTCCTGCTACTGCTGTTGTCGCTGCTTGTTCCGACTTCCGATTCTCGACGTACGGCTCACCTTGCGTACGACTCGTCTCTCgaggcctctctctctctctctctctctctctcgcgcgcccCCCTCTCCCTCCCGGGGCCAGCATCGCGATCTACAGATCGACCTCCGCCGCAGACTTCTGGTCTAGCCTTAGCGTACAGCTAACCGAAACTCCTAGCCCAGGATTACAACTCGCGATCGAGGAGCTAGGAGTCTGTCCGTGTATCCTCCAGCGTCCTCCAGCGTCCTCCAGCAGCTCTTACCCCTGTGTAGATCATCGCCGTACTTGGCGCGTAGATATGACAGCCACGTTTTATTCGCAAGGCCGAGATACTGGAGCTGACGGGTACGTTTATTTGGAACCTCTCAAAATATTTCCCACGGATCAGTTTGTTATAGTAGAGAGGGCTGGCGCGGAAAATGCTGCGTTGACGGACACGGAAGAACGCACAAGTGCCGCGTCCAGCCAGACTGACCCATCTGTTCCAACCGTCACGAATATGTGTACCACGCCTGGGAATGCTGGTGCAGGATTCGGGTACGCTTGGTCCTTCGGGGGGCCAGGGACCGAGACCCGGGAGAACGCGCAGAGCGAGCTCGCCACCAACATCAGTTATGCCGTCAACAATAATCAGGATCAAGGATCGAGTCAGAAGATACAGGTCGACATCAAGCCGGCCAAGGTTGCCGCCACCACTCATCGACGTCCGATGTTTGCGATGAACGAAAGCTGTCAGCAAACACCCACTACGCATCATGGCCATACGGGCGGAGCGCATAATCAAACTACTCACGGCACTCACGTTCGCACTAAAAAGCATCACGATGTATTTTCATTAACCTGTGACAAAGGGGGATGCAATTGCGACGCGGCACATCCTACACCCCCACCTTCCTTATTCTCCAATACCTTAGTTTTTACAACAGCTGACAAGCACGCCATGAGTAAGCACTTCATGACACCGCTCGGACCTCTGCAGCTTACCGCGGAAGAGTGCAATGAAATCTTGATGAAGAGAGCTGCCGCTGCATCCAATCAAGCCAGCACGGCGAATAACGTTGCCACGAATCAGACGGACAATACTACCCATTTCGGGCATGTTTTGACCCATGTGAATACAACGCAAATCGAGACGAAAGTCAAACAGCAACAGGATATGGGAAGTCAGGTCCGGGTACCGAAGGAACGACCCTATTCTTGTTCGGAATGCGGGAAATCCTTTCTTCTCAAGCATCATCTTACGACGCATGCGAGAGTACACACTGGAGAACGGCCACACATTTGCATTCATTGCGGCAAAAGTTTTGCGCACAAACATTGTCTTCACACGCATCTGCTGTTACATAGCGCCGAAAGGCCGTATCAATGTCGCGaatgtaaaaaatcttttaccCTGAAACATCATCTTGTAACACATACCCGCGTGCACACGCGGGAACGGCCGTTTGTCTGTCAAGAATGTGGAAGAGCCTTTCCTCTGAAACGTCACTTGGTGACCCACAGTAAGTTTCACTCGGGAGAAAGACCTTACGTTTGCGAAGAGTGCGGAGAATCGTTTTCGCAGAAGGATCATCTTACGATGCATTCACGCTTCCATGGCAGCCTACATCCATTCGTTTGCCACGATTGCGGTGCAACTTTTCAGAGGAAGTTTGAGCTAGTTAATCATGGTCGGCTACATGGCAGAGTTCCACATGCGTGTACCGTATGTGGAAAAGAGTTTCTGCAGAAGAGAACACTTTTAGCTCATATGCGTTTACATACAGGTGAAACACCTTTTGCTTGCACCGTTTGCGGAGAAGCATTCCCTCGGAAAGCAGACCTGGTCTCTCATTCTAAGATTCACAATAACAATGCAAATACTGACGAAAAGTCTCTTACATGCAGAGAATGTGGGCTAGATTTCCCAAATCGAGAAGCTCTAAATTTGCACCAAAGGTTACATACTGGTGATCGAACACTTGTAACAGACCTTTGTGGATTAGCAGCCGCCTTTCAACAAACTCCAGCACATTTCCTTACTCCAAACACTCCAGGAACACATCAGatgaaCGGGCCGATAGGAACGCCTGGTGTTAGTCATATGCATGGCGCGACGCAAACATCCCCGCCAGTGGGTACAGGACCAAAACCTAAGCCACATATTTGTCCTGATTGCGGCCGTGGTTTCGCACAAAAACATGGCTTGTCGCAACATCAACGACGTCATACAGATGGCAGTTGCCATATAAGATCACACGTATGTGATAAATGCGGCAAAGCCTTTTTCCAAAAGAATCATTTGTTACTACATCAACGTCAGCATATGGATCCGCCACCAAGTATACTTAGACAACAACAGAGACAAGCTGCCCAAGCTGCGGCTCAGCAAgcgcaacagcagcagcaacagcaagcgcaacaacaacaacagcaagttcagcagcagcagcaagtGCAACAGCAAGTGCAGCAGCAACCACAGCAACAACAGCAGACGTGTACCGTCGATACGAAAACGATTCAGTTGCAGGCAATACAGCAGCAAGTACAGCAACAAGTGCAACAACAGgtgcaacaacagcagcagcagcaacaacagcagcagcagcagcaacaacaacagcaacaacaacaacagacGCAGCAACAGCAAGCATGTTCCGTGGACGCTAAAGCAATACAGTTGAATGTCACCATGTGA
Protein Sequence: ARNAEKVRGAEVRVWERRGRKVEVVFQETRGRRSVPKSRRAEAKITYGLQHIEESCGVLFSIGVPVARQRYESDSVDRRKRGESAFRKGKRRKLQPPAGAAAATTATVAAAAAVAATPATAVVAACSDFRFSTYGSPCVRLVSRGLSLSLSLSLARPPLPPGASIAIYRSTSAADFWSSLSVQLTETPSPGLQLAIEELGVCPCILQRPPASSSSSYPCVDHRRTWRVDMTATFYSQGRDTGADGYVYLEPLKIFPTDQFVIVERAGAENAALTDTEERTSAASSQTDPSVPTVTNMCTTPGNAGAGFGYAWSFGGPGTETRENAQSELATNISYAVNNNQDQGSSQKIQVDIKPAKVAATTHRRPMFAMNESCQQTPTTHHGHTGGAHNQTTHGTHVRTKKHHDVFSLTCDKGGCNCDAAHPTPPPSLFSNTLVFTTADKHAMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQASTANNVATNQTDNTTHFGHVLTHVNTTQIETKVKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICIHCGKSFAHKHCLHTHLLLHSAERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPYVCEECGESFSQKDHLTMHSRFHGSLHPFVCHDCGATFQRKFELVNHGRLHGRVPHACTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKADLVSHSKIHNNNANTDEKSLTCRECGLDFPNREALNLHQRLHTGDRTLVTDLCGLAAAFQQTPAHFLTPNTPGTHQMNGPIGTPGVSHMHGATQTSPPVGTGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQQQQAQQQQQQVQQQQQVQQQVQQQPQQQQQTCTVDTKTIQLQAIQQQVQQQVQQQVQQQQQQQQQQQQQQQQQQQQQQTQQQQACSVDAKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -