Sinv013533.1
Basic Information
- Insect
- Solenopsis invicta
- Gene Symbol
- -
- Assembly
- GCA_016802725.1
- Location
- NC:4746894-4757185[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9e-06 0.00017 21.5 0.9 1 23 327 349 327 349 0.98 2 14 1.2e-07 1e-05 25.4 0.2 1 23 355 378 355 378 0.95 3 14 0.00037 0.033 14.3 0.7 1 23 384 406 384 406 0.97 4 14 1.3e-05 0.0011 18.9 3.9 1 23 412 434 412 434 0.96 5 14 0.00026 0.023 14.8 1.3 1 23 440 462 440 462 0.95 6 14 0.00055 0.049 13.8 3.7 1 23 468 490 468 490 0.98 7 14 0.0025 0.22 11.7 2.4 1 19 496 514 496 519 0.92 8 14 0.00021 0.018 15.1 4.0 2 23 671 692 670 692 0.97 9 14 2.1e-05 0.0018 18.3 3.6 1 23 698 721 698 721 0.96 10 14 2e-05 0.0018 18.3 0.7 1 23 727 749 727 749 0.98 11 14 1.6e-06 0.00014 21.8 3.6 1 23 755 777 755 777 0.98 12 14 0.0062 0.55 10.5 2.3 1 23 783 805 783 805 0.87 13 14 5.8e-06 0.00051 20.0 1.0 1 23 811 833 811 833 0.98 14 14 8.8e-05 0.0078 16.3 0.5 1 21 839 859 839 860 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCCAGCTCGATACCGTCGGAAATGGATTCCCCCGGCGAAGATATCATGCTGATGGAGACCGTGAAGAGAATAGTGACGCATGAAGGACGCAATGAGTCAGAGGAGACCTTCTtcctgatatcacagaatcaggCGGTGCAGTATCCCGAGGGGCCGAACGTCGAGGAAACGGTGTCCCACACGCATCAGACGGACGTTGCGCTAGAGTGGATACGCCTCTGCAGGATATGCGCCAACTCGAGCGACCACACGATACCCATCTTCGAGGGCTACGGAGCGCAGCATGACCTGTCCACCAAAATACTCAAGTACTTGCCGATACACATATCCGAAAGCGACACTCTGCCATTACAATTGTGCGAGAATTGTGCGAACCTCCTGATGGCCTGGCACGAGTTAAGCGTGGGATGCCTGAATGCGGAGAGGAAGCTGCTGGAGCTGCAGGATGCACAACTGCAAGAGAAGCAGCAGtatTACAATCCTACTTCTTTGGATAATATAGAACTGACTACGCCAATACTTACAACAGCCAGCACAACTATTGCATCTAATATCACAAACTCACCAccAAATCAGCAGGACAATGATGACAAAAATGGAGTTTGtgatacagaaaaaatttataaatctaacAGATGGACGCGTCAAGTGTCGAAAGATGAATCGGAGAGGTACACACAAATCAATTCGCCAAGGAATGAGCGGTCTGAAGAACATATTAATATCGAGGAGACTCGATTGACGATATCCAGCGAAAAAAGCCTTTCATTAACGCATTCCGCtgattttgatgaaaaattggAAAGGGCCAATTCGACAGACTCTCATTCGAACAATTCTGGGCAAGTACAAAAGTCTCAAGAAAAACACACCATAGACTATCAAGGATGTACGAAACGATTGAAACATTTATCGGGACAACATGCTGAATCAATTCGCTCGAAGATGACGGAAGATAGTGGATGTGCCTCTCACAAGTGTGAAGAATGTGGGAAAGTTCTCTCCACGTCGTACAATTTACTAATTCATCGCAATATTCATACCGGCATGCGGCCCTATATTTGTACCATTTGCGACAAAAGCTTCCGATCGGCGTCCGGTCTGAACAGGCACGTGCGCGACGTTCACGACAGAGTTAAGAATTTCGCCTGCGATATATGCGGCCGTCATTTTGCCTCAAAAGCGTCGAGGGACGAGCACAGACGTATACATTCCGGCGAGAGACCCCACGTGTGCGAGACCTGCGGTAAGTCCTTCAAGCAGAAGGCGTCTTTACACGTGCACCGACTCTATCATTCTCAAGTCCTGCCGCATCGTTGCGCTCTATGCGATCGCGGTTTCAGGAGGAAGCAGGAATTGGATAAACACGTGTCCTGGCATTCCGATCGAAAACCGTACGCCTGCGATATTTGCAACGAGCGTTTCCGCAGCAAAGGCTGCGTCGCTCGTCATCGACACACTCATACCGTTCAGCGCTCACACGTTTGCGCGATCTGCGGCGCTAAGTTTACTCAGGAGCGATATCTGAAGAGACACTGTGATAGTTTACACACATCTGTAGGAACattgAAGAATCAAATCGTCACCCACGATCAGATAATCGCCCGTAGTCATTCTCGGCGAGCATACAAGACGGGAGAACACCAAAGTAAAATCTATTCAATCCAAACTAAAACGTTCAATGTAGTCGATAGAGATTCAGAGAGTATTATTTCTCCTGcagataatattgataataaattaaccGAACGTTTATCTCCCACAAGTACATCTTCTGAAATATGCTTGTCAGATAAGTTAATGAatgatgcaaaaaagaaaagtatcGAAGACAAAGGTTCTAATTCTGCTAGTCAGATGCAAGCAAGTTGTGCGAAAAGGACAAAGACCACGCGGGATACGCAGCAGGAAGCTGTAACTAAAGTGAGCAAATCCAATGAACATTTGGAGAAGAATGTCCAACAATCCAAATGCAAAAAAACTACCTGCACTAGTCCGACAATGGTCTGCAAATCTTGTAACAAGAAGTTTTGCTCGCGGAAAAGTTATTGGGCCCACGTACGTACGCACTCTGGCGAGAAATCATACACGTGTCACATCTGCGGGAAACAATTTGTTCAGAGTGGCAGTCTATATTATCACCTGAAACACGTGCACGACGGCGTGAAGAATCACACTTGTGATATATGTGGTCGCAGCTTCGCTATGAAAACTGCCATGGAAGACCATCGACGTATCCATACTGGTGAACGTCCATATGTATGCCACACTTGTGGCAAAACGTTCAAAACCAAGGCGTCCCTCTACATACACAGTAAAACCCATACAGATGAGTTTCCGCATAAGTGCACCTATTGCGGCAAGAGATTCCGCTGGAGACAACAAATGCTGGGTCACTTGACAGTGCACACGGGCGAAAAGAATCATACGTGCGACGTATGTGGCAAGGGTTTTGGCGTGAAGAATGATCTGACCAGGCACAAACGTGTGCATTCGGAGGAGAAGCCATATACATGTCAACAATGCGGTATCAGCTTCGGGCAGAAACGTTATCTCAAAAGTCACGAACGCTTAAAATTAGGGACGTGCGGGTTACTCGCAAAATTCAAGACGAATTGA
- Protein Sequence
- MESSSIPSEMDSPGEDIMLMETVKRIVTHEGRNESEETFFLISQNQAVQYPEGPNVEETVSHTHQTDVALEWIRLCRICANSSDHTIPIFEGYGAQHDLSTKILKYLPIHISESDTLPLQLCENCANLLMAWHELSVGCLNAERKLLELQDAQLQEKQQYYNPTSLDNIELTTPILTTASTTIASNITNSPPNQQDNDDKNGVCDTEKIYKSNRWTRQVSKDESERYTQINSPRNERSEEHINIEETRLTISSEKSLSLTHSADFDEKLERANSTDSHSNNSGQVQKSQEKHTIDYQGCTKRLKHLSGQHAESIRSKMTEDSGCASHKCEECGKVLSTSYNLLIHRNIHTGMRPYICTICDKSFRSASGLNRHVRDVHDRVKNFACDICGRHFASKASRDEHRRIHSGERPHVCETCGKSFKQKASLHVHRLYHSQVLPHRCALCDRGFRRKQELDKHVSWHSDRKPYACDICNERFRSKGCVARHRHTHTVQRSHVCAICGAKFTQERYLKRHCDSLHTSVGTLKNQIVTHDQIIARSHSRRAYKTGEHQSKIYSIQTKTFNVVDRDSESIISPADNIDNKLTERLSPTSTSSEICLSDKLMNDAKKKSIEDKGSNSASQMQASCAKRTKTTRDTQQEAVTKVSKSNEHLEKNVQQSKCKKTTCTSPTMVCKSCNKKFCSRKSYWAHVRTHSGEKSYTCHICGKQFVQSGSLYYHLKHVHDGVKNHTCDICGRSFAMKTAMEDHRRIHTGERPYVCHTCGKTFKTKASLYIHSKTHTDEFPHKCTYCGKRFRWRQQMLGHLTVHTGEKNHTCDVCGKGFGVKNDLTRHKRVHSEEKPYTCQQCGISFGQKRYLKSHERLKLGTCGLLAKFKTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -