Basic Information

Insect: Solenopsis invicta
Gene Symbol: SCRT1
Assembly: GCA_016802725.1
Location: NC:17203062-17209523[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.8 4.2e+02 1.4 0.1 3 11 64 72 62 79 0.65

2 14 4.1 3.6e+02 1.6 0.0 1 23 196 223 196 223 0.80

3 14 0.00042 0.037 14.2 0.2 1 23 228 250 228 250 0.94

4 14 9.6e-06 0.00084 19.3 1.2 1 23 258 280 258 280 0.98

5 14 2.6e-06 0.00023 21.1 0.3 2 23 288 309 287 309 0.97

6 14 1.3e-06 0.00011 22.1 0.8 1 23 315 337 315 337 0.99

7 14 0.00022 0.02 15.0 3.4 1 23 344 366 344 366 0.98

8 14 6.9e-07 6.1e-05 22.9 1.7 1 23 372 394 372 394 0.96

9 14 4e-06 0.00035 20.5 0.1 1 23 400 422 400 422 0.98

10 14 4e-07 3.5e-05 23.7 1.2 1 23 428 451 428 451 0.96

11 14 2.1e-06 0.00019 21.4 0.5 1 23 457 480 457 480 0.96

12 14 2.5e-05 0.0022 18.0 3.2 1 23 486 508 486 508 0.99

13 14 5.2e-05 0.0046 17.0 0.4 1 23 514 536 514 536 0.94

14 14 0.00035 0.03 14.4 0.0 1 23 542 566 542 566 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.8	4.2e+02	1.4	0.1	3	11	64	72	62	79	0.65
2	14	4.1	3.6e+02	1.6	0.0	1	23	196	223	196	223	0.80
3	14	0.00042	0.037	14.2	0.2	1	23	228	250	228	250	0.94
4	14	9.6e-06	0.00084	19.3	1.2	1	23	258	280	258	280	0.98
5	14	2.6e-06	0.00023	21.1	0.3	2	23	288	309	287	309	0.97
6	14	1.3e-06	0.00011	22.1	0.8	1	23	315	337	315	337	0.99
7	14	0.00022	0.02	15.0	3.4	1	23	344	366	344	366	0.98
8	14	6.9e-07	6.1e-05	22.9	1.7	1	23	372	394	372	394	0.96
9	14	4e-06	0.00035	20.5	0.1	1	23	400	422	400	422	0.98
10	14	4e-07	3.5e-05	23.7	1.2	1	23	428	451	428	451	0.96
11	14	2.1e-06	0.00019	21.4	0.5	1	23	457	480	457	480	0.96
12	14	2.5e-05	0.0022	18.0	3.2	1	23	486	508	486	508	0.99
13	14	5.2e-05	0.0046	17.0	0.4	1	23	514	536	514	536	0.94
14	14	0.00035	0.03	14.4	0.0	1	23	542	566	542	566	0.92

Sequence Information

Coding Sequence: ATGGCTGACTCCGATAAAGATTCCATACAGTGCCTAGTGTGCAACAGTAAAGTTGGAGTATCCACTAGAAATAGTATACGCATCTTTGATGATTCTAGTTATACTGTATCTGAGAAGCCACTTGTGGATGTTATATCAGCTGTTTTAGAAGTTGATATCAGTGAAGAGTCTGTGCATTCTCttgtcatttgtaaaaaatgttttaagctGTTCAATGAGGTAGATGAGCTTGAAAGTAAATTGATTCAAATCAAAATGGaattatgtaacaattataaaaagacgattgaagttaaaaaattatgtgacaTACTTCAAAGTGAGGAAGACTATAACGATCATGATTATACAGACAATACAGAAAGTCAAAACACTCTAATGGAGACACAAGAAGAAAAGGATTATATTGAAGAAGAGGATACACGAGAAGAAGAATCGATTATAGAAACAGAAGACTCTTCTTTATTCACAGTTGAAGAAGTAGATGAAACAACAAACAGTTCTGAtgacaaaaagaaattgaaaaagagtaaaattaaagaaattcacccTCTGGAAAGTaTTGTATTTAGAGATGAATCTTCATACACCTGTTCTTTATGTCCAAACGAGGAGGAGAGATTCACGGCAGATGCTAAAGCTATAATAGCGCACATGAAAGATGTGCACGATGTTCGTTTGTACATCTGTGACGTGTGCGGACAAGATTTTAGAAAGAGAAACGAACTGTCTCTGCATCTCGATGATCACGTTGCGAAGGAGGAGGGGGACTTTCAATGCGAGATATGTAATAGAATATTTAGTAATCTGCGATTATTCCGAATTCATAAAAGGATACATTATCCGCAAGTGAAATCATGGCCCTGCGATACATGtggaaaaaaatacaattCCAAAAATTTATTGGAGGAACATATGAATACACACATGGGTGTTCGTCCATACGTGTGCGAGACCTGTGGCAAAGATTTCGCATCCAAGTATACATATAAAGCGCACGTGAAAACGCACGAGCTACGACCTCGTCCATTTGAGTGCAgtcaatgtaataaaaaatttctgagccaacaaaatttaattcatcATGGACGAACACATGATGGCATAAAAGATTATGTATGCCATCAGTGTGgtaaagCTTTTACCTCGTCTCACAATTTAGAGGTACACAATATAGTACATACTGGATATAAACCCTATATATGCCGAATTTGTGGGAAAGCATTTGCGCGTAAAGCGGAAATACGCGATCATGAAAGAACTCATACAGGTGAGAAACCTTATCAGTGCGAGTTTTGTGGAGCAACATTTAGTCAGAGATCAAATCTACAATCTCACAAACGGGCGACACATTATAATGATAAACGTTATAAGTGTGATGACTGTGGAAAAGGTTTCAAAAGAAGAAGATTATTGGATTACCATATAAAAGCGGCACACACTGGTGAAAGACCATACAAATGTGACACATGCTCAGCTACATTTGTCTATCCTGAGCATTTTAAGAAACACAGGCGTATACATACAGGCGAGAAGCCATATCTTTGCGAGGTTTGTGGCAAAGCATTTAATAGCAGAGATAACAGAAACGCTCATAGATTCATACATAGTGATAAAAAGCCATATGAATGTTTAGTATGCGGTATGGGCTTTATGAGAAAACCATTACTTTACGCACATATGCAAGTTCAGggTCACTTAAATGATACTATAGTAGTGAACCAACCACGACTGACAATGGAAGATGTAATAACTATTCCTGGAAGTAATAGCGAAATATTGGTGGAAGAAGTTGAAAACGAACagCTGGATGAAGCTGAACTATATGAACTGAAAGATCATGTGATTATACAACAAGAAGGGGAAGATCAGATATATAATGAAGAAGATGTTGTATTAAGTATACCAGCAGAAGAAACTGTAAATGCCGAAGTAGAACATCTTACCGTTGAAGATCAGATAAGTTTTGTGGAAGGTGAAGTTACAGACGAcgataaaactataattaatcaAGTAGAAACGGTGTACACTTATAATGAAACTGAGGAAGGAGAAACGATAGTTATACCATCTTCTTCGCAAGGAAACGAGAAGAATATGCGATTAGTGCAAATCAGATTTCCAACTTCTGTAGATGGAGAAAGCAAAAACTGGTTGAGTTTAGTACAAAATACTTAA
Protein Sequence: MADSDKDSIQCLVCNSKVGVSTRNSIRIFDDSSYTVSEKPLVDVISAVLEVDISEESVHSLVICKKCFKLFNEVDELESKLIQIKMELCNNYKKTIEVKKLCDILQSEEDYNDHDYTDNTESQNTLMETQEEKDYIEEEDTREEESIIETEDSSLFTVEEVDETTNSSDDKKKLKKSKIKEIHPLESIVFRDESSYTCSLCPNEEERFTADAKAIIAHMKDVHDVRLYICDVCGQDFRKRNELSLHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCDTCGKKYNSKNLLEEHMNTHMGVRPYVCETCGKDFASKYTYKAHVKTHELRPRPFECSQCNKKFLSQQNLIHHGRTHDGIKDYVCHQCGKAFTSSHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCDTCSATFVYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQVQGHLNDTIVVNQPRLTMEDVITIPGSNSEILVEEVENEQLDEAELYELKDHVIIQQEGEDQIYNEEDVVLSIPAEETVNAEVEHLTVEDQISFVEGEVTDDDKTIINQVETVYTYNETEEGETIVIPSSSQGNEKNMRLVQIRFPTSVDGESKNWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01408467;
90% Identity: -
80% Identity: -