Basic Information

Insect: Solenopsis invicta
Gene Symbol: -
Assembly: GCA_016802725.1
Location: NC:7594470-7635648[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1e-07 3.9e-05 23.2 1.6 2 44 5 44 4 44 0.96

2 10 7.1 2.8e+03 -1.9 0.2 13 39 68 93 62 101 0.58

3 10 4.4e-06 0.0017 18.0 1.7 2 43 156 195 155 196 0.93

4 10 0.00033 0.13 12.0 1.7 16 44 227 257 218 257 0.90

5 10 7.1e-06 0.0028 17.3 2.0 2 43 322 361 321 362 0.93

6 10 0.079 31 4.4 2.9 15 43 392 422 384 423 0.73

7 10 1.1e-05 0.0042 16.7 1.0 2 43 488 527 487 528 0.92

8 10 0.0023 0.92 9.3 0.9 16 43 559 588 550 589 0.88

9 10 1.8e-05 0.0071 16.0 1.7 2 39 653 687 652 697 0.85

10 10 1.1 4.4e+02 0.7 0.5 16 43 723 752 715 753 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1e-07	3.9e-05	23.2	1.6	2	44	5	44	4	44	0.96
2	10	7.1	2.8e+03	-1.9	0.2	13	39	68	93	62	101	0.58
3	10	4.4e-06	0.0017	18.0	1.7	2	43	156	195	155	196	0.93
4	10	0.00033	0.13	12.0	1.7	16	44	227	257	218	257	0.90
5	10	7.1e-06	0.0028	17.3	2.0	2	43	322	361	321	362	0.93
6	10	0.079	31	4.4	2.9	15	43	392	422	384	423	0.73
7	10	1.1e-05	0.0042	16.7	1.0	2	43	488	527	487	528	0.92
8	10	0.0023	0.92	9.3	0.9	16	43	559	588	550	589	0.88
9	10	1.8e-05	0.0071	16.0	1.7	2	39	653	687	652	697	0.85
10	10	1.1	4.4e+02	0.7	0.5	16	43	723	752	715	753	0.77

Sequence Information

Coding Sequence: ATGTCCCAAAATTTAGTGTGGCATTATTTCATCCTACACAGACCATCAGAAGCAGAatgcattttatgtaataaattctaTCATAATGAGCATGTGCCAAATTTAGAGACACATCTGATACGTGAACATCCAGAAGTAATAACAGAAATTCGTGAAAATATTAGACGTGCCGATTTAggagtatattttatatttgatgtaGAAGATTCTAAGGCAAGATGCATTAACAATTGCATTGTCAACATATTTAACGGAATAGATTACTTAAAAGATCATTTGCACAGCCATGGTATAAATAAACATGCAAGGGCACTTAACAATACACAAAGAAATCCATACGGAAATGCATCACAGCCAACAGCCGTAGAGGACAACGGAAGCGCAAGTACTAGCAAACAACCAATTGATGTACTTTCGCAAAACACAGAAGATCATGAAAAATTGTCATGGAGCAATTCCAATAACTTGGTATGGCAATATTTCAAACCAGTTAAATACCCTTATGCAAATTGCAATATCTGTAAAAATCGCTACAAAAGTataagatatttgagaaattttgagCAACACTTGCTACTTTGTCATGCAGAACTAATAGATGAAATACGATGTGAAATAGATGAAGAAATTAGGCGTCTCAATCTATCACCATATTTTGTATGCGACACAGAACTTCCTagaataaaatgcaatattggtaattgcaattacaaaattaatatgtttcacggaacaaaaaaattgaaagatcaTTTGAGCATTAATCATAGCAgtacatataaaagaatttctatGCCAAAAAGTAACACAGATATAATGATAAAACAAGTAGCTGAAGGCAGCAATGAAAGTATACAGCTAATAAAAGACAACGAAGGTGTAAATGCTAGTAAACATCCGACTAATACACTTTtgcaaaaaacagaaaatattgtagaattGCCATGGGGCAATTCCAATAACTTGGTATGGCGATATTTCAAACCAGTTAAATACCCTTATGCAAATTGCAATATCTGTAAAAATCGCTACAAAAGTataagatatttgagaaattttgagCAACACTTGCTACTTTGTCATGCAGAACTAATAGATGAAATACGATGTGAAATAGATGAAGAAATTAGGCGTCTCAATCTATCACCATATTTTGTATGCGACACAGAACTTCTTCGAATAAGATGCAATATTGATAATTGCattcacaaaattaatatatttcacgaaacgaaaaaattgaaatatcatTTGAGCATTTATCATAGCAGTACATATACAAGGATTTTTATGCCAAAAAGTAACACAGATATAATGATAGAACAAGTAGTTGAAAGCAGTAATGAAAGTATACAGCTAATAAAAGGCAACAAAAGTGTAACTGCTAGTAAACATCCGACTGATACACTTTTGCAAGAAACAGGAAATCTTGTAGAATTGCCATGGGGCAATTCCAATAACTTGGTATGGCGATATTTCAAACCAGTTAGAAACCCTTATGCAAATTGCAATATCTGTAAAAATCTCTACAAAAGTATAAGATATTTGGGAAATTTTGAGCAACACTTGCTACTTTGTCATGAAGAACTAATAGATGAAATACGATGTGAAATAGATGAAGAAATTAGGCGTCTCAATCTATCACCATATTTTGTATGCGACACAGAACTTCCTCGAATAAGATGCAATATTGataattgcatttacaaaattaatatgtttcacggaacaaaaaaattgaaagatcaTTTGAGCATTTATCATAGTACATATACAAGGATTTCTATGCCAAAAAGTAACACAGATATAATGATAGAACAAGTAGCTGGAGGCAGTAATGAAAGTATACAGCTAATAAAAGACAACAAAAATGCAAATGCTAGTAAACATCTGACTGATGCACTTTTGCAAGAAACagaaaattttgtagaattaccATGGGGCAATGCCAATAACTTGGTATGGCGATATTTCAAACCAGTTAGAAAGCCTTATGCAAAATGCAatatctgtaaaaaatattgcaaaggtagagttttgaaaaaatttgaacatCACTTGCTAGATTATCATATAATACTAATAGCTCAAATGCGATGTGAAATAGATGAAGAAATTAGGTATCGCAGTCTATCACCATATTTTGTATGCGACACAGGACTTTCTcgaataaaatgcaatgttgataattgcatttacattcTCAACTTATTTAATGGATACATGGGATTAATCGAACATTTGTACAATCATCATGCAAGTATATTTACAGCAATGTTTCAATACATTCCAAGAAATACCATACGTATAATGACAAAATCAGTAGCTGAGGAAGATAATACATTTACAAACGTTGATGACCCGCGGCCTGGTCCAAGTTGGCAAACCTAA
Protein Sequence: MSQNLVWHYFILHRPSEAECILCNKFYHNEHVPNLETHLIREHPEVITEIRENIRRADLGVYFIFDVEDSKARCINNCIVNIFNGIDYLKDHLHSHGINKHARALNNTQRNPYGNASQPTAVEDNGSASTSKQPIDVLSQNTEDHEKLSWSNSNNLVWQYFKPVKYPYANCNICKNRYKSIRYLRNFEQHLLLCHAELIDEIRCEIDEEIRRLNLSPYFVCDTELPRIKCNIGNCNYKINMFHGTKKLKDHLSINHSSTYKRISMPKSNTDIMIKQVAEGSNESIQLIKDNEGVNASKHPTNTLLQKTENIVELPWGNSNNLVWRYFKPVKYPYANCNICKNRYKSIRYLRNFEQHLLLCHAELIDEIRCEIDEEIRRLNLSPYFVCDTELLRIRCNIDNCIHKINIFHETKKLKYHLSIYHSSTYTRIFMPKSNTDIMIEQVVESSNESIQLIKGNKSVTASKHPTDTLLQETGNLVELPWGNSNNLVWRYFKPVRNPYANCNICKNLYKSIRYLGNFEQHLLLCHEELIDEIRCEIDEEIRRLNLSPYFVCDTELPRIRCNIDNCIYKINMFHGTKKLKDHLSIYHSTYTRISMPKSNTDIMIEQVAGGSNESIQLIKDNKNANASKHLTDALLQETENFVELPWGNANNLVWRYFKPVRKPYAKCNICKKYCKGRVLKKFEHHLLDYHIILIAQMRCEIDEEIRYRSLSPYFVCDTGLSRIKCNVDNCIYILNLFNGYMGLIEHLYNHHASIFTAMFQYIPRNTIRIMTKSVAEEDNTFTNVDDPRPGPSWQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -