Sinv001817.1
Basic Information
- Insect
- Solenopsis invicta
- Gene Symbol
- -
- Assembly
- GCA_016802725.1
- Location
- NC:11982905-11986649[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-08 1.1e-05 24.7 0.0 2 37 15 51 14 54 0.91 2 2 6 4.7e+03 -2.9 0.0 19 26 86 93 86 93 0.92
Sequence Information
- Coding Sequence
- ATGGTGCGGCATTATATACGGAAAAAAAACACAACAGTTAGAGAAGAAAGTATAAAGCAGGCCattgttgaagtaaaacaaGGACGAATGACGATAAGGCAGGCTGCGGATTACTTCCAAGTGCCTTCCTCAACGGTGTACCGTCAGTGCAAGAATATGGCAGATGAAAACATTACTGCAGAAAATGTTTCTGTTGCACGACCAGGACATAAACCgattttCAATGCGGCACACGagcagaatttaatgaattACATTCAGAAAGCATCGGATATTTATTTCGGTCTATCGCCGAAGGAGATACGAAAATTGGCATTTGAATATTCACAACGACATCAATTGCCAGTACCAAAAAGTTGGATGGATACTAAAATGGCCGGAGAAGATTGGTTGGAAAAATTTACGACACGTCATCCACGTTTGTCCATTAGAAAACGACCTACGAGACTCGCCCGTGCCACAAGTTTCAATCGCACAACAGTAGGAGCATTTTTCACCCTACTTAAGTCTGTGTACAATCGTTTAAACCTAGTTCCTCGTTTAATATGGGACATGAACGAAATGGGAGTTACCACTGTTCAGAGACCTCAAAGAGTCGTCAGCCGGCGCGATTTCCAACAAATTGGGCGCATTACTCCTGCCGAGCGTGGTCTATTCGTTACCCTGACAGTGACGATATCGGCTCAAGGAGATGTCCTGCCACCCTTTTTCATCTTTCCGGGACTCCATTTCAAATCACACTTCTTGACCGGTGCCCCAACTGGAAGCGATGGTGCAGTCCACCCAAGTGGTTGGATGACCGCGgacatatttttgcaatttcttcAGCATTTCCAGAGAAACGTGCGTGCTTCGGCAGACAATCCAGTGCTCCTTCTACTGAATAACCAGGAATTCTATCTGTCCATCGAAGGATTGGAATTCTGTAAAGAGCATTTCATAACACTTCTTTCTTTACCACCGTACACCACGCATAAGTTACAGCCTCTTGATCGTAGCGTGTTTGGTCCGCTGAAAAAAGCGATCAATACTCATTGCGACCTCTGGATAACGAACAATCCAGGAAAAAAGATGTCCGTACAAAATATACCGACTATTATTAATTCAGCGTTACCATTAGCGGCCACGAGCACAAATATCAAAGAGGGATTTAGTTGTACTGGAATATCGCCATTAAATCCAGACGTGTTTCAAGATAATGATTTCAGCCAGGTAACCGATTGTCCTAATCTCAATGATGCTGTAGACACGAGCTCTCATCAAGGTGAAGAAATTCCACTAACAAGTAACGCTAGTAACTCAAGGGATTCATTTTCAATCGACATTAAAGACGAAATTTTAACCGACGATTTTAATGATGAGAGAACTTGCAATGACAAAGATCAAGATATGGATGAATCGCTTCAGTCAATTAGACAATTTCCTAAAGCTCCCACGAGAAAAGCGTCACAGAGAGGACGTAAAAGACAGTCATCAGAAATGTTGGCAGGACGTTATGAATTTATTTCCTGTGGAATAAGCATAAagccgagaaaaaaaatttag
- Protein Sequence
- MVRHYIRKKNTTVREESIKQAIVEVKQGRMTIRQAADYFQVPSSTVYRQCKNMADENITAENVSVARPGHKPIFNAAHEQNLMNYIQKASDIYFGLSPKEIRKLAFEYSQRHQLPVPKSWMDTKMAGEDWLEKFTTRHPRLSIRKRPTRLARATSFNRTTVGAFFTLLKSVYNRLNLVPRLIWDMNEMGVTTVQRPQRVVSRRDFQQIGRITPAERGLFVTLTVTISAQGDVLPPFFIFPGLHFKSHFLTGAPTGSDGAVHPSGWMTADIFLQFLQHFQRNVRASADNPVLLLLNNQEFYLSIEGLEFCKEHFITLLSLPPYTTHKLQPLDRSVFGPLKKAINTHCDLWITNNPGKKMSVQNIPTIINSALPLAATSTNIKEGFSCTGISPLNPDVFQDNDFSQVTDCPNLNDAVDTSSHQGEEIPLTSNASNSRDSFSIDIKDEILTDDFNDERTCNDKDQDMDESLQSIRQFPKAPTRKASQRGRKRQSSEMLAGRYEFISCGISIKPRKKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -