Sinv002888.1
Basic Information
- Insect
- Solenopsis invicta
- Gene Symbol
- clz9
- Assembly
- GCA_016802725.1
- Location
- NC:14537094-14546072[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-09 1.7e-06 27.3 0.0 4 36 23 55 20 62 0.87
Sequence Information
- Coding Sequence
- ATGGAGGAACGGAAGAAGTCCCAAATCAAAAAAAAACCTAAGCAAAATATGAATTACAACGAGCAAAACATAAAACTAGCTTTACAACAAATTAGCAAAGGGATGTCCGTACGTAGCGCTTCGAAAGCACTTGGCATTCCCAGAACTACGcttcaagataaaaaatttggaCGACATCAACGATCAGTTGGAGCTCCTACTATATTGACACAAGATGAGGAAAAAGTTTTTACTAACTGGATAATCGAACTGGGAAAGCAAGGATTTCCAGTAACAAAAGATCAACTCTTATACAGTGTTTCCACATACATGGCAGAGAATGGACGAAGCAATTGTTTCAAGGATGGAATTCCAGGGCGCCGATGGTATGAAAGTTTTTTAAATCGTCACAAAGAAATATTCAAAAGAGTACCTCAAAATTTGTCGACGACTAGAGCAAACATAAATGAAGAAGGAGTTCGAAATTGGCATGCAAATATCAAGAACGTTTTTGAAGAATATGATCTCAACCAAGTTTTAACTGACCCCAGTCGTATTTTTAATTGCGATGAAACAGCTTTTTACCTTTgtccaaaaaataaatttattcttgctAAAAAAGGATCTAAGCAGATTTATAATAGAACAACCAATGATGAAAAGGAATGCCTGACAGTTCTTAATGGAGCATCAGCTACTGGATGTTTAATACCACCATTAACTCTGTTCCCATACAAACGCATGCCACAGaatattgttgcaaaaatgCCTAAAAATTGGGGAATAGGGAGAACCGACTCAGGTTGGATGACATGCGAggcattttatgaatatataataaatattttttatccgtATTTGCAACAAAATAACGTTGAATTTCCTGTTGTCATGTTCCTTGATGGGCATTCATCTCATTTTTCTTTGCATCTAAGTACATTTTGCAGAGAAAAAGGTATTATTTTAATCGGCTTGATACCAAATGCAACACATCTTCTGCAACCTATGGATGTATCtctgtttcacccccttaaaaaCGAgtag
- Protein Sequence
- MEERKKSQIKKKPKQNMNYNEQNIKLALQQISKGMSVRSASKALGIPRTTLQDKKFGRHQRSVGAPTILTQDEEKVFTNWIIELGKQGFPVTKDQLLYSVSTYMAENGRSNCFKDGIPGRRWYESFLNRHKEIFKRVPQNLSTTRANINEEGVRNWHANIKNVFEEYDLNQVLTDPSRIFNCDETAFYLCPKNKFILAKKGSKQIYNRTTNDEKECLTVLNGASATGCLIPPLTLFPYKRMPQNIVAKMPKNWGIGRTDSGWMTCEAFYEYIINIFYPYLQQNNVEFPVVMFLDGHSSHFSLHLSTFCREKGIILIGLIPNATHLLQPMDVSLFHPLKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01254718;
- 90% Identity
- -
- 80% Identity
- -