Sinv012176.1
Basic Information
- Insect
- Solenopsis invicta
- Gene Symbol
- clz9
- Assembly
- GCA_016802725.1
- Location
- NC:13215371-13218757[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-09 1.3e-06 27.7 0.0 5 38 16 49 13 52 0.90 2 2 8.1 6.4e+03 -3.4 0.0 36 45 120 129 118 129 0.84
Sequence Information
- Coding Sequence
- ATGAAGACAAAAAAGCAAGTAAGAGACAATGATGCTCGGTCATCATTGATGAATGCACTGCATGATGTTCGTCGAGGGATTCCGCTTAGACAAGCCAGCAAAATGTACGGAATATCAAAAAGTACGCTacacgataaattaaaaaacaaatcaaaAATTGACTCTACAATGGGACCATCGACCGTTCTGTCTCCAGAAGAAGAAAAGGAGTTACTTAACTGGATTttttataacagcgaaaaagGCTTTCCGGTGACGAAGGATCAATTTTTAGATAGCGTGCAATTATTAATAGGTCAGTTGCAAAGAATAAATCCTTTCACGAATAACAGACCTGGACGTCACTGGTATGAGGCATTTATTCGTCGACACCCTGAGCTGTCACGTCGAATTGCGCAAAATTTAACAACTATAAGAGCATCAGTTACTGAAGATTGTTTAAGAAAGTGGTTTAATGAAGTTCGTCAGCACTTGCTAAAAAAAGAACTGCTTTTTATTGATGCTTCACGGTACTTTAATTGCGACGAAAGCTCCTTTTTATTATGTCCAAAAGCAGAGCaagttattgtcaaaaaagGTGCTAAAtcagtatataaaattgtaaatgctGACGAAAAAGAGGCACTGACAACATTAGTAATGATTAGCGCTTCCGGAGTTATGGCACCTCCTATGATAATGTACGCTTATAAAAGAATACCAGTAATTATAACACAGAACATCCCGAAACGCTGGAGCATTGGAACTTCAGACAAAGGATGGATGACTGCTGAGTCGTTTTATGAATATGTTACTAACGTATTCTACCCCTGGCTGAAAACCACTAACATTGTATTCCCTGTAGTATTATTTGTGGATGGTCATTCCTCGCATTTGACATTGCCTTTGAGCAATTTTTGTCGACAGCATGAGATTGAGTTAATAGCTCTGTACCCGAACGCCACGCATATTTTGCAGCCATTAGATGTAGCGGTGTTCCATCCTTTAAAATCATCGTGGAAGAAAACTGTCAATAATTGGAGGCTAGAAAATAATGGAGGACGTCTGAAAAAAGAGATGTTTGCCCCACTGTTACAAAAAGCTATTGATTCAATAGATCTTGCCTCCATGGCTAAAAATGGATTTCAAACGTGTGGACTCTATCCTTTTACACCGGATGCcgttaattttaatgttttgaacAAGCAGAAGAAATCTGAAGCTAAGAAAACTGAAGAAGCTGAGAAAACTGAAGAAGCTAGTAAAATGGAtatgataaaatacattaatttttttgaacaacAATTGCCGGAAGGAATGATCGACAAATTTAAAGCGGCAGAGACAGCAGGAGTCTGGAATTATGAAATTGAAAATGAAGGTCTTTTTCGGTACTGGTTGGAGATTAACAGGAAAACCGGTAACTCACCTGACAAAATCCAATTTTGA
- Protein Sequence
- MKTKKQVRDNDARSSLMNALHDVRRGIPLRQASKMYGISKSTLHDKLKNKSKIDSTMGPSTVLSPEEEKELLNWIFYNSEKGFPVTKDQFLDSVQLLIGQLQRINPFTNNRPGRHWYEAFIRRHPELSRRIAQNLTTIRASVTEDCLRKWFNEVRQHLLKKELLFIDASRYFNCDESSFLLCPKAEQVIVKKGAKSVYKIVNADEKEALTTLVMISASGVMAPPMIMYAYKRIPVIITQNIPKRWSIGTSDKGWMTAESFYEYVTNVFYPWLKTTNIVFPVVLFVDGHSSHLTLPLSNFCRQHEIELIALYPNATHILQPLDVAVFHPLKSSWKKTVNNWRLENNGGRLKKEMFAPLLQKAIDSIDLASMAKNGFQTCGLYPFTPDAVNFNVLNKQKKSEAKKTEEAEKTEEASKMDMIKYINFFEQQLPEGMIDKFKAAETAGVWNYEIENEGLFRYWLEINRKTGNSPDKIQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01408994;
- 90% Identity
- -
- 80% Identity
- -