Sfug009175.1
Basic Information
- Insect
- Solenopsis fugax
- Gene Symbol
- -
- Assembly
- GCA_003595255.1
- Location
- QKQZ01055789.1:8514-11258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.8e-05 0.01 17.1 3.1 1 23 262 284 262 284 0.98 2 12 1.3 1.9e+02 3.6 6.3 1 23 289 311 289 311 0.97 3 12 2.9e-05 0.0044 18.2 0.8 3 23 322 342 320 342 0.97 4 12 1e-05 0.0015 19.6 4.6 1 23 431 453 431 453 0.98 5 12 0.0002 0.03 15.6 1.3 1 22 458 479 458 482 0.91 6 12 1.1e-06 0.00017 22.7 0.6 1 23 521 544 521 544 0.96 7 12 2.8e-05 0.0042 18.3 1.8 1 23 575 597 575 597 0.98 8 12 0.00016 0.023 15.9 4.0 1 23 611 633 611 633 0.96 9 12 0.00015 0.022 16.0 4.7 1 23 639 661 639 661 0.98 10 12 0.00023 0.035 15.4 1.4 1 23 667 689 667 689 0.98 11 12 4.4e-05 0.0067 17.6 6.5 1 23 695 717 695 717 0.98 12 12 0.00021 0.031 15.5 0.3 1 21 723 743 723 744 0.93
Sequence Information
- Coding Sequence
- ATGCAGATTGACAGTACGATGTTGAAGCGAGCGAAGCCGGACACCAGCCTCTGCCGCGTCTGCCTGACCGTGGATCACAACAACCAGTGCATCTTCCGCAGGAACTGGGACGACCCGGAGAGCCCATCCGGATCCGAGAAGTTGCAGTTATGCTGTGGCGTGGAGGTCTTGGAGAATGATGGCCTACCCACTAGCATCTGTCTCGATTGCACAGTGAAAGTTAATGTCGCCTACGAATTGAGGAAACAATGTCAGAAGGCAGACGTAGAACTCAGAAAGCTGTATGGGAAAGCCTTGAGGACAAACGTTGTTGGCAGTTTTGTCACTACAAAAGATCAGTGCAGTCAAACTGAGCAGTCTTTTGGATACAGTCTTTTTGATACAACCAATTTGAACAATGTGGAGTTAAATGTGAGTAACAAAGTTAACATGGACAAGAATACTGTGCACTCAAATATCATGAAGCAAGAACAAATATCAGATGCCTTTGAGCAAACCAGACAGGATGTCTCGATAGATACTGAAACAGATTTAGATTGTGGTAGTATATACAAACAAATGGAACAtgataagataattaaaaaggaTATTTATAGAACGAGAAGATTAGCTATGTTTAAAAGAGTCACATCTATAGAAAATTTGCGGAATTACAAGGAAAGGCAGAGGCGGTATATCAAGAAGACAGTGAGTGTCAAACGCGACAGCAGTGACAACGAGTATCAAACGAAGGCGAGAAATGCCTGCGGCAGGACGGACAGGGCATCCGAGCTcgaattacaatataaatgtcaGAAATGTGATAGATTTTATTCCAGTAAAAAGTCTTTGGATAGACACGCGTCGACCCATAATGATAAAGAGTTCAAATGCGACAGCTGTGATAAGCAATTTTTCTGTCTGGATAAATTGCACAAACACGTTAATTTGCACAGAGCGAAGGAGAAGCCGAAACCGGTGATATGTAAGATCTGTAATAAGAGTTTCAGGAAGATTGACACCATGGTCAGGCACCTCAACACTCATAAGAAGGCATATCCCAAGGACGTTTTCTCTATCTTGAAAGAGATACGGGATAGAAGAAAACTAGAAAACAATCCAGAATCTTTTGAAACGTCACTCACGATTGGCGAGGACGAGGAAGCGCACGACGGACAACTACAAAGTGAAAACGACGGTACGATGAGAGAGCTGAGAAAACGCAACAATATGAAAGTGGAGCAGCAAGATTCAGATTTGATGAATAGCGACTCGAGTGACAAAAGCGAACCTCTCGACGACGCGTCGCTCTTCCGTTGCAAGCATTGTAGCAAGAGTTATCGTACCGAGAGGTCGCTTCAACGTCATCTGTTGGTACATGACGAGAAAAAATACGTCTGCAACGTCTGCAATATGAAGTTTTTCCGTCAGGACAGGCTCAAGAGCCATATGGATCGGTACGGCCACGACGAGACCAAGGTGTACCCGGAGCCGCAGAAACCGCCCGACGACAAGTCGGCCATCAAGCTAATAAACACCTGGATAAGGGAGGAATTAGATTCCGATAATGAGGGCAAGGGCTTTCCATGTACGATCTGTGGGAAGTCGTATGACACGAAGAAGTCCTTGTTGAAGCATCAAATGAACGCGCATGGCGGACAAGACGAATGCTGTACGAGCTGCGGTACCACGTGTAACTGCGCGTACAAGGATCAGGAGAAGTGCAATGAGAAATCGAAACCGTACATCTGCGAGGAGTGCAATAAGTCGTTCGAGAAGGAGATCAAGCTGCACAAACATCTGCGAATTCACGCACGCGCCAAGGAGCAGCAGGACGCGAACTTCAAGCGTTTTCTGTGCCACATATGCAGCAAGACGTTCCGGCAGAATACCGGCCTCATGTTCCACATGAGAACGCACACGGGTTACAAGCCGCACGTGTGCAAGTATTGCGGTCGTGGCTTCACGTCCAACTCGAACTGCATCAATCACGAAAGGACTCATACGGGCGATCGGCCGTTCGTCTGTCAGTACTGTAGCGCGGCATTCGCTAAATCGTGCACCCTCAAGGCTCACATCACCACGCACACCGGCGAGGCGAATTATCACTGCAAGACCTGTGGCAAGTCATTCCGTCGGTTGAAATACTTGAAGGAGCACAGATTTACGCACACGGGAGAGAAGCCGTACGCATGTAAGATCTGTGGCACCGCGTATAGCCATTCTGGCAGTCTTTTTGTACACGAGAAGAAATGCAAGGCGCAGTACAGTAATTATCAGCCGGGGATTGCGCAAAATGCgcaacagcaacaacaacagGTTTCCTACAGTCAATCCCCTCAGACTACTGGCGGCATTTCCATGGCGTCCACTTCTTCGGTTATAGCGCCTATCATCACTACGCTACCTCAGGCTCACCTAAATGTCATTAACAGCACTATGAATGTACAGGCGAACAAAGATTACATGGATAACGTTCCGCGAATGAATGCGCATGCAGCGACTAACGCAACTACGGTCGTCTCGTCGAGTCTGCACTCGAATGTCGATATCTCCGAAATGAGTTCCGTCGTCAGGAACTTCTCTATCATCGGACAAATGTTTCACACTTAG
- Protein Sequence
- MQIDSTMLKRAKPDTSLCRVCLTVDHNNQCIFRRNWDDPESPSGSEKLQLCCGVEVLENDGLPTSICLDCTVKVNVAYELRKQCQKADVELRKLYGKALRTNVVGSFVTTKDQCSQTEQSFGYSLFDTTNLNNVELNVSNKVNMDKNTVHSNIMKQEQISDAFEQTRQDVSIDTETDLDCGSIYKQMEHDKIIKKDIYRTRRLAMFKRVTSIENLRNYKERQRRYIKKTVSVKRDSSDNEYQTKARNACGRTDRASELELQYKCQKCDRFYSSKKSLDRHASTHNDKEFKCDSCDKQFFCLDKLHKHVNLHRAKEKPKPVICKICNKSFRKIDTMVRHLNTHKKAYPKDVFSILKEIRDRRKLENNPESFETSLTIGEDEEAHDGQLQSENDGTMRELRKRNNMKVEQQDSDLMNSDSSDKSEPLDDASLFRCKHCSKSYRTERSLQRHLLVHDEKKYVCNVCNMKFFRQDRLKSHMDRYGHDETKVYPEPQKPPDDKSAIKLINTWIREELDSDNEGKGFPCTICGKSYDTKKSLLKHQMNAHGGQDECCTSCGTTCNCAYKDQEKCNEKSKPYICEECNKSFEKEIKLHKHLRIHARAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSNYQPGIAQNAQQQQQQVSYSQSPQTTGGISMASTSSVIAPIITTLPQAHLNVINSTMNVQANKDYMDNVPRMNAHAATNATTVVSSSLHSNVDISEMSSVVRNFSIIGQMFHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00765856;
- 90% Identity
- iTF_01355626;
- 80% Identity
- -