Basic Information

Insect: Solenopsis fugax
Gene Symbol: SCRT1
Assembly: GCA_003595255.1
Location: QKQZ01054216.1:1-2165[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.4 6.6e+02 1.9 0.1 3 11 64 72 62 79 0.65

2 12 4 6.1e+02 2.0 0.0 1 23 196 224 196 224 0.78

3 12 0.00036 0.054 14.8 0.2 1 23 229 251 229 251 0.94

4 12 8.6e-06 0.0013 19.9 1.2 1 23 259 281 259 281 0.98

5 12 2.3e-06 0.00034 21.7 0.3 2 23 289 310 288 310 0.97

6 12 1.1e-06 0.00017 22.6 0.8 1 23 316 338 316 338 0.99

7 12 0.00066 0.1 13.9 5.6 1 23 345 367 345 367 0.98

8 12 6.2e-07 9.4e-05 23.5 1.7 1 23 373 395 373 395 0.96

9 12 3.6e-06 0.00054 21.1 0.1 1 23 401 423 401 423 0.98

10 12 3.6e-07 5.4e-05 24.2 1.2 1 23 429 452 429 452 0.96

11 12 2.8e-06 0.00042 21.4 0.5 1 23 458 481 458 481 0.96

12 12 2.3e-05 0.0034 18.5 3.2 1 23 487 509 487 509 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.4	6.6e+02	1.9	0.1	3	11	64	72	62	79	0.65
2	12	4	6.1e+02	2.0	0.0	1	23	196	224	196	224	0.78
3	12	0.00036	0.054	14.8	0.2	1	23	229	251	229	251	0.94
4	12	8.6e-06	0.0013	19.9	1.2	1	23	259	281	259	281	0.98
5	12	2.3e-06	0.00034	21.7	0.3	2	23	289	310	288	310	0.97
6	12	1.1e-06	0.00017	22.6	0.8	1	23	316	338	316	338	0.99
7	12	0.00066	0.1	13.9	5.6	1	23	345	367	345	367	0.98
8	12	6.2e-07	9.4e-05	23.5	1.7	1	23	373	395	373	395	0.96
9	12	3.6e-06	0.00054	21.1	0.1	1	23	401	423	401	423	0.98
10	12	3.6e-07	5.4e-05	24.2	1.2	1	23	429	452	429	452	0.96
11	12	2.8e-06	0.00042	21.4	0.5	1	23	458	481	458	481	0.96
12	12	2.3e-05	0.0034	18.5	3.2	1	23	487	509	487	509	0.99

Sequence Information

Coding Sequence: ATGGCTGACTCCGATAAAGATTCTATTCAGTGCTTAGTGTGCAACAGTAAAGTTGGAGTATCCACTAGAAACAGTATACGCATCTTTGATGATTCTAGTTATACTGTATCTGAAAAGCCACTTGTGGATGTTATATCAGCTGTTTTAGAAGTTGATATCAATGAAGAGTCTGTGCATTCTCTtgtcatttgtaaaaaatgttttaagctGTTCAATGAGgTAGATGAGcttgaaagtaaattaattcaaataaaaatggagttatgtaacaattataaaaagacgattgaagttaaaaaattatgtgacaTACTTCAAAGTGAGGAAGACTATAACGATCATGATTATACAGACAATATAGAAAGTCAAAACACTATGATAACGGAAGCACAAGAAGAAAAGGATTATAATCAAGAAGGGGAAGAACAAGAATCGTTTATAGAAACAGAAGACTCTTCTTTATTCACCACAGTTGAAGAAGTAGACGAAACAACAAACAGTTCTGATgacaaaaagaaattgaaaaagagcaaaattaaagaaattcatCCTCTGGAAAGTATTGTATTTAGAGATGAATCTTCATACACCTGTTCCTTATGTCCAAacgaggaggaagagagattCACGGCAGATGCTAAAGCTATAATAGCACACATGAAAGAGGTGCACGATGTTCGTTTGTACATCTGTGACGTGTGTGGACAAGATTTTAGAAAGAGGAACGAACTGTCTATGCATCTCGATGATCACGTTGCGAAGGAAGAGGGGGACTTTCAATGCGAGATatgtaatagaatatttaGTAATCTGCGATTATTCCGAATTCATAAAAGGATACATTATCCGCAAGTGAAATCATGGCCCTGCGAAACATGTGGAAAGAAATACAAttccaaaaatttattggagGAACATATGAACACACACATGGGTGTTCGTCCGTACGTGTGCGAGACCTGTGGCAAAGATTTCGCATCcaagtatacatataaagcGCATGTGAAAACGCACGAGCTACGACCTCGCCCATTTGAGTGCAGTCaatgtcataaaaaatttctgaaccagcaaaatttaattcatcatGGACGAACACATGATGGCATAAAGGATTATGTATGCCATCAGTGCGgtaaagCTTTTACCTCGTCTCACAATTTAGAGGTACACAATATAGTACATACCGGATATAAACCCTATATATGCCGAATTTGTGGTAAAGCATTTGCGCGTAAAGCGGAAATACGCGATCATGAAAGAACTCACACAGGAGAGAAACCTTATCAGTGCGAGTTTTGTGGAGCAACATTTAGTCAAAGATCAAATCTACAATCTCACAAACGGGCGACGCATTATAATGATAAACGTTATAAGTGTGATGAATGTGGAAAAGGTTTCAAAAGAAGAAGATTATTGGATTACCATATAAAAGCGGCGCACACTGGTGAAAGACCATACAAATGTGACACATGCTCAGCTACATTCGTCTATCCTGAGCATTTTAAGAAGCACAGGCGTATACATACAGGCGAGAAGCCGTATCTTTGCGAG
Protein Sequence: MADSDKDSIQCLVCNSKVGVSTRNSIRIFDDSSYTVSEKPLVDVISAVLEVDINEESVHSLVICKKCFKLFNEVDELESKLIQIKMELCNNYKKTIEVKKLCDILQSEEDYNDHDYTDNIESQNTMITEAQEEKDYNQEGEEQESFIETEDSSLFTTVEEVDETTNSSDDKKKLKKSKIKEIHPLESIVFRDESSYTCSLCPNEEEERFTADAKAIIAHMKEVHDVRLYICDVCGQDFRKRNELSMHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKKYNSKNLLEEHMNTHMGVRPYVCETCGKDFASKYTYKAHVKTHELRPRPFECSQCHKKFLNQQNLIHHGRTHDGIKDYVCHQCGKAFTSSHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDECGKGFKRRRLLDYHIKAAHTGERPYKCDTCSATFVYPEHFKKHRRIHTGEKPYLCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00182766;
90% Identity: -
80% Identity: -