Basic Information

Insect: Solenopsis fugax
Gene Symbol: -
Assembly: GCA_003595255.1
Location: QKQZ01081355.1:1-2566[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0016 0.23 12.8 0.5 2 23 77 98 76 98 0.96

2 11 0.003 0.45 11.9 5.0 2 23 167 188 166 188 0.95

3 11 1.6e-05 0.0024 19.0 4.4 1 23 325 347 325 347 0.98

4 11 1e-07 1.6e-05 25.9 0.4 1 23 353 375 353 375 0.98

5 11 9.2e-07 0.00014 22.9 0.9 1 23 381 403 381 403 0.98

6 11 2.3e-05 0.0035 18.5 1.1 1 23 415 437 415 437 0.98

7 11 6.6e-08 1e-05 26.5 2.9 2 23 444 465 443 465 0.98

8 11 1.4e-07 2.1e-05 25.5 1.6 1 23 471 493 471 493 0.98

9 11 1.5e-06 0.00022 22.3 1.7 1 23 499 521 499 521 0.95

10 11 4.8e-05 0.0073 17.5 5.2 1 23 527 549 527 549 0.97

11 11 2.1e-06 0.00032 21.8 4.0 1 23 555 577 555 577 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0016	0.23	12.8	0.5	2	23	77	98	76	98	0.96
2	11	0.003	0.45	11.9	5.0	2	23	167	188	166	188	0.95
3	11	1.6e-05	0.0024	19.0	4.4	1	23	325	347	325	347	0.98
4	11	1e-07	1.6e-05	25.9	0.4	1	23	353	375	353	375	0.98
5	11	9.2e-07	0.00014	22.9	0.9	1	23	381	403	381	403	0.98
6	11	2.3e-05	0.0035	18.5	1.1	1	23	415	437	415	437	0.98
7	11	6.6e-08	1e-05	26.5	2.9	2	23	444	465	443	465	0.98
8	11	1.4e-07	2.1e-05	25.5	1.6	1	23	471	493	471	493	0.98
9	11	1.5e-06	0.00022	22.3	1.7	1	23	499	521	499	521	0.95
10	11	4.8e-05	0.0073	17.5	5.2	1	23	527	549	527	549	0.97
11	11	2.1e-06	0.00032	21.8	4.0	1	23	555	577	555	577	0.99

Sequence Information

Coding Sequence: GTCTGGCAGGGAGATGGTTTGCCAGAAAAGATGTGTGACCGTTGCGTCACTAGAGCGGAATCGGCCCTTTTATACCGAGAGCAATGTCGCGCTGCGGACAGGGCTTTGAGGCAAGCAGCGTTGAAGGTATCTCGATTGACATCGTACACCACTGTTTCTGGCTGTAAGCTCTATCAAAATCAACAGAGTCAAGGATTCGTGCCAGTACAAAATTCTCATAAGACACTAAAATGCGTGGAATGCGGCGCGGTGTTTATGAATTACCAGGAACTCTGCGCCCATAATCGACTGCATTTACCCTTTATTCAGGATAATATACCTATGCAGCATATGCATATTGTGGAGTCTCAGAATCCATATCTTAACTTTACTCATGTCAGTTCAAACTTTGCAAAcgataatattccaaatacgCAATTATCTCCATTAGTCAGGCCAAATATGATGCACACTGTGTCACCGAATGAAGAGAGTTCGAGTCGAGCTGCCTGTGCCTTGCATTGTTCCCTGTGCAATCATACTTTTACCAATAGAAGGCAATTAATAAGTCACAATATAACGCACAGCGCGGAAAGCGTTGACATGTCGTGCGATAATGAAAACATAGAGATTTGTGAAAATTCCAATCATATTCCGCAAAATTTGAGCTATGAAAGATCGATTCATTCCGTTGATAATCCTATTCAGAACTTATCATATCAGAGGTCCACCGTGGACGACACTGATGGGATGCAGAATATAAACTTCCCGGAGAATATCGATCTCGATAGTGTCCAGGAAAGCAGTTCGGAACGCATGCCAAATGTAACGATACATTCCGAGAACGATGTGTCCATTGCCGAAAACTTGAGATTTATGAAATCACCTGGAAAGGACAGGCAGCTGGCGATTGAATATCACGGATGTCCGAATGATGTTAATTACAAGCAGTCTCTCGACATAAAAGCCACAGAAGATATCCACGCTAAGAAACATCAGTGTGAGGTATGCTCGAAACAATTCTCACAAAAGTCTAAGTTATTTACTCATCAATTGTCTCACTCTGGTCAGCAGCCGTTTAAATGTCCGACATGTGGCAAAGGTTACGCATCGAAGAGTAAGCTCAGCGCACACATGAGATTACACACCAAGACCAACGTACATCAATGTAAAGTgtgcgataaaatattttcctatcCATCGTATTTAGAAGAGCATGTAAAAATccataataaaagtaataatactCTGCAGAGCAAGGACTACGAGTGTGCTACGTGCAACAAACGTTTtcgtcttttaaaaaatttgaaagctCACGAAAGACTTCATACCGGAAGAGGTTTGGTGCAATGCGAGATTTGTGATAAAAAGTTTAgccataattataatttaaaaatgcatttacgCACACATAAGACATCGAGGGTACACAAGTGCGAATATTGTGACAAGCGTTTCGTGCAAAAAGGCAATCTGGTCGAGCATTTACGAATACACACTAAGGTGAAGCCTTTTGCATGTAAACTATGCGGCAAGAGATTCGCACAATCGAGCCATCTTAAAAGTCATGAAGCCTCCCACGGCACGTTGAGGCAGCACCAATGTCGATTATGTGGAAAAAGATTCAAGCTGGCCAATCATTTGAAAcgacatttaaatttacatactGGTTCAAAGACTTATAAGTGCAGTCAGTGTAATCAAATGTTTTCACAGTCTTTTAGTCTGACGAGACACTTAAAGAAGCACAACGAatcacatatataa
Protein Sequence: VWQGDGLPEKMCDRCVTRAESALLYREQCRAADRALRQAALKVSRLTSYTTVSGCKLYQNQQSQGFVPVQNSHKTLKCVECGAVFMNYQELCAHNRLHLPFIQDNIPMQHMHIVESQNPYLNFTHVSSNFANDNIPNTQLSPLVRPNMMHTVSPNEESSSRAACALHCSLCNHTFTNRRQLISHNITHSAESVDMSCDNENIEICENSNHIPQNLSYERSIHSVDNPIQNLSYQRSTVDDTDGMQNINFPENIDLDSVQESSSERMPNVTIHSENDVSIAENLRFMKSPGKDRQLAIEYHGCPNDVNYKQSLDIKATEDIHAKKHQCEVCSKQFSQKSKLFTHQLSHSGQQPFKCPTCGKGYASKSKLSAHMRLHTKTNVHQCKVCDKIFSYPSYLEEHVKIHNKSNNTLQSKDYECATCNKRFRLLKNLKAHERLHTGRGLVQCEICDKKFSHNYNLKMHLRTHKTSRVHKCEYCDKRFVQKGNLVEHLRIHTKVKPFACKLCGKRFAQSSHLKSHEASHGTLRQHQCRLCGKRFKLANHLKRHLNLHTGSKTYKCSQCNQMFSQSFSLTRHLKKHNESHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016013;
90% Identity: iTF_00128419;
80% Identity: -