Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.6e-13 6.9e-10 39.3 0.0 1 39 62 101 62 105 0.90

2 4 2.3e-13 4.3e-10 40.0 0.1 2 39 117 154 116 157 0.94

3 4 3.2e-19 6e-16 58.7 0.0 1 45 171 216 171 216 0.97

4 4 5.8e-19 1.1e-15 57.8 0.1 1 42 223 265 223 266 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.6e-13	6.9e-10	39.3	0.0	1	39	62	101	62	105	0.90
2	4	2.3e-13	4.3e-10	40.0	0.1	2	39	117	154	116	157	0.94
3	4	3.2e-19	6e-16	58.7	0.0	1	45	171	216	171	216	0.97
4	4	5.8e-19	1.1e-15	57.8	0.1	1	42	223	265	223	266	0.97

Coding Sequence: ATGTCGGATCGGGCGAGCGTGAGCTCGAAGAACGCCGCCGACAGCGACAACATGATGATGATAACACCGGAGCTGCTGGGACTGATGCCGTCGGGAAGCTCCGGCCAGTCGGACTCAGGTGAGAACAATTCGAGGGGGCACAGCGGACAATCCAGTTCGCATCATCACGGTTCAAAGTCGTGGACGCAGGAGGACATGGACGCGGCTTTAGAAGCGCTGAGGAATCACAACATGAGCCTGACTAAAGCTTCGGCAACATTTGGTATTCCCTCGACAACTCTGTGGCAACGGGCACATCGACTGGGCATCGACACACCGAAGAAGGACGGCCCCACGAAATCTTGGAGTGACGAAAGTTTGAATAACGCTTTAGAAGCGTTACGCACCGGCTCCATTTCGGCTAATAAGGCGTCCAAAGCGTATGGCATACCTTCCAGTACGTTATACAAAATCGCTAGGAGAGAAGGTATCAGATTGGCCGCGCCATTCAACGCGAGTCCCACCACGTGGACGCCCGCCGATCTGGACCGCGCTCtagaagcaataagatctggTCAGACGTCTGTTCAGAGAGCGTCGACGGAATTCGGTATACCTACGGGAACTTTGTACGGAAGATGTAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGCGAAGACGCTATGACTGAAGCTCTCGAAGCCGTCAGATTAGGTCATATGAGTATAAATCAAGCGGCGATCCACTACAATCTGCCGTATTCGTCACTGTACGGACGTTTCAAGCGAGGCAAATACGAGGAACCCGTCGTCGGCGATATCTCGCAGGATGGCACCAGTCCGCATTTCCATCAGAGTCCCAACCAGAACCACTCATCCGCCCTTCCAGATCAAATGCCTTACCCGGGCAGCTGA
Protein Sequence: MSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS

Sequence clustering based on sequence similarity using MMseqs2