Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.9e-10 1.5e-06 28.3 12.4 1 18 11 28 11 29 0.98

2 7 1.1 5.6e+03 -2.3 0.4 5 10 53 58 53 59 0.72

3 7 2.2e-08 0.00012 22.3 11.6 1 18 64 81 64 82 0.97

4 7 0.25 1.3e+03 -0.3 0.4 1 10 91 100 91 100 0.74

5 7 2.1 1.1e+04 -3.2 1.6 6 10 106 110 106 110 0.93

6 7 0.54 2.9e+03 -1.3 0.7 1 8 116 123 116 124 0.77

7 7 0.49 2.6e+03 -1.2 0.2 12 17 142 147 142 147 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.9e-10	1.5e-06	28.3	12.4	1	18	11	28	11	29	0.98
2	7	1.1	5.6e+03	-2.3	0.4	5	10	53	58	53	59	0.72
3	7	2.2e-08	0.00012	22.3	11.6	1	18	64	81	64	82	0.97
4	7	0.25	1.3e+03	-0.3	0.4	1	10	91	100	91	100	0.74
5	7	2.1	1.1e+04	-3.2	1.6	6	10	106	110	106	110	0.93
6	7	0.54	2.9e+03	-1.3	0.7	1	8	116	123	116	124	0.77
7	7	0.49	2.6e+03	-1.2	0.2	12	17	142	147	142	147	0.80

Coding Sequence: ATGTTGCAGGTATGCGGCAAGCCGCTGGACTGCGGCAACCACCGTTGCGAGGTGGTGTGCCACGAGGGCGACTGCGGCCAGTGTGCACTGACGCAGACCCGTCACTGTCCTTGCGGCAAGTCGCAATACTTGTTGCCTTGCGACAAGGACACGCCCACTTGCGGCGATACCTGCGGCAAGACGCTCGAGTGCGGCCAGCATGCCTGCTTCCTGCGCTGTCATACTGGGCCCTGTGGACCGTGTTTGGAGCGTGTTGTGAAGACTTGTCGCTGTGGACTACATTCCAACGAAGTTCCTTGCACCAAAGAGTACATCTGTGAATCGAAATGCAAAAGGAAAAGAGATTGCAACCTGCATGCTTGCAACCGTAAGTGGCTCGCAGTTCTTCTTCGAGGACGTCGACGTTGCGTTTTGCGTCCAATGGATGGAGCCTGTCCAAGCGACGCGCTTCCTCGTTCACACGCGATTCCAAGTCCTCCAGACGCGTGTCCACGCAGATTGCAAAAGCTGGCTGAGAAAGTGCATAGAGAGATGAAACGCGTGGACACGCGTCTGGAGGACTTGGAATCGCGTGTGAACGAGGAAGCGCGTCGCTTGGACAGGCTCCATCCATTGGACGCAAAACGCAACGTCGACGTCCTCGAAGAAGAACTGCGAGCCACTGAAGAAAACATTCAAACTCTGTTCAATGACGTCACAACACTCAGAGAAGGACATTATCCGCAGGCATCTGACCTACATAAGAGTAGAGGCTCAAGATGA
Protein Sequence: MLQVCGKPLDCGNHRCEVVCHEGDCGQCALTQTRHCPCGKSQYLLPCDKDTPTCGDTCGKTLECGQHACFLRCHTGPCGPCLERVVKTCRCGLHSNEVPCTKEYICESKCKRKRDCNLHACNRKWLAVLLRGRRRCVLRPMDGACPSDALPRSHAIPSPPDACPRRLQKLAEKVHREMKRVDTRLEDLESRVNEEARRLDRLHPLDAKRNVDVLEEELRATEENIQTLFNDVTTLREGHYPQASDLHKSRGSR

Sequence clustering based on sequence similarity using MMseqs2