Sfur005240.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- RREB1
- Assembly
- GCA_014356515.1
- Location
- chr2:13432216-13440537[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0027 0.14 12.9 0.5 1 23 96 118 96 118 0.98 2 9 1.4e-05 0.00071 20.1 1.6 3 23 141 161 141 161 0.97 3 9 4e-05 0.0021 18.7 4.0 1 23 167 189 167 190 0.96 4 9 0.0026 0.13 13.0 2.8 1 23 851 874 851 874 0.97 5 9 0.51 26 5.7 0.1 2 11 1146 1155 1145 1160 0.89 6 9 0.22 12 6.9 2.2 1 23 1173 1196 1173 1196 0.96 7 9 0.00018 0.0094 16.6 1.8 1 23 1236 1260 1236 1260 0.97 8 9 0.91 47 4.9 1.3 1 23 1347 1370 1347 1370 0.95 9 9 0.0027 0.14 12.9 4.3 2 23 1418 1439 1417 1439 0.96
Sequence Information
- Coding Sequence
- ATGAATACACCTAAAAAACAACCAAAGTTTTGTGATGCCAAAGAAAATAATGAAACAGCTGACAAACACATCAAAGAACCAGATATCCACGAAAACAACAATAATCGGACATCAAGGACATTAAAACGTAACAAACCCTCTGACAATACCGAGAGAAACGAGTCTGATAACTTGGAAAAAGGATCTTCAACGAAAGTCAACTTGGATGAGAAATATCAACTCCAGACGAAAAACTCAGACAACGAGTCTGTAGAAGCAGACAACAAATATCTTATTGTGAGCCGATTCATCTGCCCGATCTGCAACGTACTTCTCACCTCGGCGCATGAGTTCACGCTGCACATGCGTTCACACAATAACAACAACGGAGATGCATCCAGCAACCATACATCAGGCAAAGACGAGTGCCTTCTCCTTGGTTGCTGCATTTGTGGCAAAGTTTTCAGTTCATCAAGCTCATTGAACAGACATGTATTGGAGCACTCTGGAAAACGTCCATTCAAATGTAGCATCTGCAAAGTGAGTTTTACAAGAAATGACAGCATGTATCGTCATATAAGAAACCATCATGTCTCTGGCAAGGGAATTAAGAACTCGCCAACAAATAAAATGAACAGTGGCAATCCTTTGGAGAGCAGTTATAAAAGTGATTGTGGATCAGACAGTTATGGAACAGGTTCAACATTGTCTCCTTGTTTAAAACGGCCCAAAACACTACCGCGGAAGGTACACAAACAGAAAAGGCACACAAAAAATACAAACAGAGGCGCTGACACCACCGCCAATTCAAATCAATTGAGATATTTAGAATCTACAATGAAAGCGAAATTCAACCCCATGTCCACTTCCACCACTAGTAAGAGAAAGAAAGCAGATCTCGATTCTTCACTGGACGACAGTAGAAACAAGGAGCAATACACTCGATTGTCCTCCAATACAGTTGCCAGAAACAGTCCCCCAGTTACTTTAACAGTATCAAATTCTCGCCGCTCAAATGGAAAAGATCTCAGATTAGTCAACAAGAAAATGCAACTGAGAAGATGCAACAATATCAAGAGAACACTATTCTCAGGTAGGCTCGAAGAAAATGAATCATCACATGAGTCCTTATCACTTGACTTGGACAAAGAAGTGATGGAAAATTTTCCTGCTATCAACACTGACTTATCAAACGGCATGCCTATGGTTAGTGCACAAACTGTGGAGGCCTTACCAAACAAGAATTCACAAAACAAAATCACTTCAAACTTTCTACCATTGAATTTTGGAGTCAGGTTGGAACAAGAAGATAATAATACCATTGAAGAGGAATATCAGAGTGATGTTGCTGTCAATCTGACAAGAGACATGCAAAATAAACAGAAAAAGAGTTTGGATGTGGTGACAATCACGTCTGAAGAAGATGTAAACAATGATGAAGATGATGACGAAAATGGAATGGATGTGTTTGATTTAAATAATGAAAACAAAAACAACCCGTTGGACTTGAGCATGAACAAATTAGATATGAGTAGCAAACGTCAAAATTATGTAAAGCATTACTCTTTAGAGAATAAGAAATCTGATTTTAGTGGTTTTGGCATGAGTAAAGATGATGCTAGTAGCATTGAATATGATAATCATCCAGCAGACATTCCTCAAGATTTGAGCAAGAAGAAAGTTGTACAGGTGATTGGTGATTCAGAAGTTATGATAGATTTGACAGATGATGAGAAAGGAGGGGATTCAAACCCAAAACAAAACAATGTATTAGATCTCCTAAACGTTTTTAAATTGAACCTTGCACAGTTCTATGCAGCTACTGCTGCTGCTGGCAACTCTGGAACTGCTCCACCATCAACGTTTTTCTTGAACAATAATACTGCAAATTCCAATAATAACAATAGTGCTTTCTGGCCATTTGCTGGAGGCCCAAATCCTGCTGCAGTTACAGCTCTCCTCTCTCCTCACTTCCTGGCTCCATATTCAGGAGTCATGTTCCCCACGAATTTCACTCATGACTATATGCAGGAGATGAAGAAGTGTCTGCACAAAGACCAAAACAGAGGACTCCATCTCTCATCTGGCGTCTCTCTCATATTGGACCAAATTGCCATGGCTACAGCTGCATATCGTAGACAAATACTCTATCATCAAGTACTCATGGAATACAATCAACGCATGAAGAGCTCGGCTCCTCTCAATTTCATTGATGCTTTGAATAAGAATTTTGTTGAGGAGCCTAGTAATGATTCAACTGAGAATAATAACAAGATCAGCCCTATACAGCAGACAGAGATCAATTCACATTCTACTTCTTCACTATTAAGAAACTCACAATTGGGGTTAGTTGATAAATCTATTGGAAAGTTCAACAGTGGCTCCAGTTTGGCACAAAAAAACGTTCCAGTACCAGGTATGAATAATCCAGTACAATCTCCTCGTGCACCTGGCTCAACCAATAACAATGTAATTAACAATAGTATGTCTCCTTCATCTGTAAAAATGATGATCAAGAATCATATGTTGATTCCAAAGCAAATGCAACGACGTAACTGCACTGAACAACCGTTCTCTTGTAAATACTGCTCAAATCGCTACACACTTTCTTCAAACATGTGGAGACACATCAAGAAGCAGCATCCACAGTATTGGATTCAGATACAGAAATCAAGGGACGGCGCAGGGAGGAAAGCTCAGTCCAGAAATAATCTCAAACCGACTGGCAACTTAAACAGTCAACTGTCCTACTTTCCACATCTTGCTGTTGCGAGTGGATCTGATAATGGAACCAGTCAGCCATGTTCACCGCAAGAGGATCCCATCAAAGAGAATTCTGTACTCATGGATGTGGGCAGGATAATTTCCGATGAAGTGAAGCTTTCCATTGCCTTCGATTTCAAATCAAAGAACCGTGCCATTCAACATGAAAAACAATCTCTTGAGAGTAGAGAAGGGAAATGCATCAATCAGAAACCGACCAATGTAATCAATGAAGATGCTGGAGAAGAGACTAGCAAGAGATTAGAGTGTAATGAGCAGATGCTAGTCACTGACTCTGAAACTGAAGATGTTGACATGGAAGATGAAGCAGAAGCTGAGGGAAAAAAAGTCACTCAGGCTCCCCTACTTGAACTTCTGCTGTCAGCTAAGAAAGATAGTGACAAAATTCTGTGGCAAAAATATGAAAATTTGAACGTCAATCTGGCATCAGTGTCAAGATTTCTAGAAAATGCTTCCACCCACAATTTCAAGGAATATTTTCATAAAAATGACAACCAAATTCGAGATGAAAACAGTGAGAAGGGTGAGGAAGGCCTTGTCGCAGCCAAAAGTGAGGGCAACAACTCTGGAAGTGATAAAAACAAGTCTGAGTCAGACATGGCTGGCAGTAGCATGGGAAACCACCAGGGTAAGAAATTGAAGAGCAAATATTGCCTGCTACCAACCTGTGTTTCCTGCCCTTATTGCTCCAAAACATTTTCATGGTTATCAGCTTTAGGACGCAACGTTCTCACGCACACCGGACAAAAGCCTTTCAAATGTTTGTATTGCTCCCTTGGTTTCACCACCAAATTAAGCCGTGATCGTCACCTGCTCAGAAAACATAGCAATAACAACACCAACACAAAAAACAACAATGAGGAAGAAGTGCTAGGTAGAGTCTTGGAGAATGGTGGTTCAGAGGATTGTTACACAATAAGAAACGCCCCATTAGAAAGACCCTACAAGTGCAAATACTGTCCCAGTGCTACATTTTCCACTCTGAGCAACCTGAAGAAGCATATTTCATCGAAGCATTCCAACTGCAGTATTCCTGGGTTCAAAGGTGGTGCTGAAAGAAGCAGTTGCGATGGGTATGACAGACAGCAAAGCTTCACAGAAGAATTAGAGTCTGATGTGACTGTGACAAAGGTGCAACCAAGTCAAGACATTATCATTCCACCTAAGGTAATCCATAACAAAGTGAGAGCTGAGGCCAACAGCTTACCTCTATCATTGCTGAATATTGATGCTGCTGAAACGTCAGTGTCAATTCAATCGCTTTCCGACCAACTATTCAAGTGTCATCTGTGTTACAACAGCTTTGGAGAACGTCAAGATGCCCTGGATCACATCAGAGAGACACATGAATCCGAGTATGCGCTACTAGCCATGAAGGGCGCTCTCAACTCTGGTGCCAATAAAGCGTTTCTTCTGGACGACCCCAATGGAGAAGAGGGCCTTGAACAATTGCAAGGGAAACTTCCCGACTATGCCTACCGGAAGGTAATGTGCATGATCTGCTTGCACCGTTTCCGTTCGACCCATAACCTAATCAGTCACATGAGAACCCACACAGGCAAGCGCCCGTTCTCCTGCGACATTTTGCCGCCGACGATTCTCGCAGAAGGGCAACTTGGTGAGTCACCGCAAGAAGCACTCGTCGCTGTTGCTCGACAATGTCGCTCGCCAACGAAGCCAGCAATTACAACAATCTGCCGCTCACGTCTAACAGAAAACCTGGCAACGAGGAGTTCGATCTAA
- Protein Sequence
- MNTPKKQPKFCDAKENNETADKHIKEPDIHENNNNRTSRTLKRNKPSDNTERNESDNLEKGSSTKVNLDEKYQLQTKNSDNESVEADNKYLIVSRFICPICNVLLTSAHEFTLHMRSHNNNNGDASSNHTSGKDECLLLGCCICGKVFSSSSSLNRHVLEHSGKRPFKCSICKVSFTRNDSMYRHIRNHHVSGKGIKNSPTNKMNSGNPLESSYKSDCGSDSYGTGSTLSPCLKRPKTLPRKVHKQKRHTKNTNRGADTTANSNQLRYLESTMKAKFNPMSTSTTSKRKKADLDSSLDDSRNKEQYTRLSSNTVARNSPPVTLTVSNSRRSNGKDLRLVNKKMQLRRCNNIKRTLFSGRLEENESSHESLSLDLDKEVMENFPAINTDLSNGMPMVSAQTVEALPNKNSQNKITSNFLPLNFGVRLEQEDNNTIEEEYQSDVAVNLTRDMQNKQKKSLDVVTITSEEDVNNDEDDDENGMDVFDLNNENKNNPLDLSMNKLDMSSKRQNYVKHYSLENKKSDFSGFGMSKDDASSIEYDNHPADIPQDLSKKKVVQVIGDSEVMIDLTDDEKGGDSNPKQNNVLDLLNVFKLNLAQFYAATAAAGNSGTAPPSTFFLNNNTANSNNNNSAFWPFAGGPNPAAVTALLSPHFLAPYSGVMFPTNFTHDYMQEMKKCLHKDQNRGLHLSSGVSLILDQIAMATAAYRRQILYHQVLMEYNQRMKSSAPLNFIDALNKNFVEEPSNDSTENNNKISPIQQTEINSHSTSSLLRNSQLGLVDKSIGKFNSGSSLAQKNVPVPGMNNPVQSPRAPGSTNNNVINNSMSPSSVKMMIKNHMLIPKQMQRRNCTEQPFSCKYCSNRYTLSSNMWRHIKKQHPQYWIQIQKSRDGAGRKAQSRNNLKPTGNLNSQLSYFPHLAVASGSDNGTSQPCSPQEDPIKENSVLMDVGRIISDEVKLSIAFDFKSKNRAIQHEKQSLESREGKCINQKPTNVINEDAGEETSKRLECNEQMLVTDSETEDVDMEDEAEAEGKKVTQAPLLELLLSAKKDSDKILWQKYENLNVNLASVSRFLENASTHNFKEYFHKNDNQIRDENSEKGEEGLVAAKSEGNNSGSDKNKSESDMAGSSMGNHQGKKLKSKYCLLPTCVSCPYCSKTFSWLSALGRNVLTHTGQKPFKCLYCSLGFTTKLSRDRHLLRKHSNNNTNTKNNNEEEVLGRVLENGGSEDCYTIRNAPLERPYKCKYCPSATFSTLSNLKKHISSKHSNCSIPGFKGGAERSSCDGYDRQQSFTEELESDVTVTKVQPSQDIIIPPKVIHNKVRAEANSLPLSLLNIDAAETSVSIQSLSDQLFKCHLCYNSFGERQDALDHIRETHESEYALLAMKGALNSGANKAFLLDDPNGEEGLEQLQGKLPDYAYRKVMCMICLHRFRSTHNLISHMRTHTGKRPFSCDILPPTILAEGQLGESPQEALVAVARQCRSPTKPAITTICRSRLTENLATRSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -