Sfur007904.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chrX:7625820-7641868[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00012 0.0063 17.1 0.9 1 23 273 295 273 295 0.98 2 11 0.00067 0.034 14.8 0.2 2 23 328 349 328 349 0.97 3 11 6.4e-06 0.00033 21.1 0.5 1 23 355 377 355 377 0.97 4 11 0.0015 0.076 13.7 0.2 3 23 385 405 384 405 0.97 5 11 0.0073 0.38 11.5 1.6 1 23 413 435 413 435 0.97 6 11 0.00011 0.0055 17.3 3.9 1 23 478 500 478 500 0.97 7 11 0.00011 0.0056 17.3 5.2 1 23 506 528 506 528 0.98 8 11 0.0064 0.33 11.7 0.7 1 23 533 555 533 555 0.96 9 11 3.6e-06 0.00019 21.9 1.8 1 23 561 583 561 583 0.98 10 11 0.0085 0.44 11.3 0.3 1 23 588 610 588 610 0.98 11 11 0.00076 0.039 14.6 0.2 1 23 616 638 616 638 0.98
Sequence Information
- Coding Sequence
- ATGAGCTGGAAGAAAAAAGAGCGTCGCATTGAAATCAGAGACGCAACAGGTTCAAAAGTAAATCCACCTTCACCAAGTGAGGACGAAGAAAAAGATTTCGAAAAATCTTATAAAGATAATTTTTCAAATTGTCAAGAAAAAACAATCACTGATCTGGATTCGCCATCTGGAACTCAAGTGGTCGGCGTGCAGGAAGGCGATGTGACTTACATCAAAGTAAACCCTGATCCGCTGAGCATGCTAGAGGTTATTGATAACAGCGATAATAGTACCACTAATCCATTGACTGCAGTAACCGATAACGCGATGAACGGAACCAGTCATGTTATGACTTCCAATGGCACCGATACCAGTACTGACCAGAGCGCCGTCAACGCCACAAATAGATGCGAGGAAAACGTTCTAATGGTGAGTGTGGAGCCGGAGGCGGTTAGTCTGCTGGAAATCGGCACGCCGGGCACGACCACCACTCAGCACAGCTCTTCAAACTCGGGTGCGGGACAGGACACAATGCCAATCTACCAACATCAACAGCAACAACAACAGCAGCAGCAGCCACATCATCACCCTCAGCAGACTGCGCATCATCACCATAATCATCATCACATGCAGCCGATGGCTCCCGGCAATATGCAGCAGATGACTACCATGCAGCCGATGGAGCATCACATTGGCAACGGCGAACCGGTCGTGCACATGGAGATACATCCACAGCAAATGCATCCAGCTGATGAACAGGCCGCTGTCAATCAGGAGGGAATGATGCGGCCTGATGCTAGTTGGATGATGTCGGACGCATCAGGCCATGGCCGTACCTACAGCTGCACATCGTGTGAGGAGACGTATCCTACTTTGGATCAGTTGAAACAGCACATGACTAAACATATAGCTGAGAATCCCTACATTTCGAAATATTTTGACACAACCGTCTACGATAACAATGAGTTCATGCGGAGTGGTGCCAACCCTGGTAAGCCTAATGAGTGCACAATATGTATGGAGTCTTTCTCAAAACCAGCCGCTTATCGTCAGCACATGAGGCTTCACGCCGGCGAAAAGCCATTCAATTGCAAAGAATGTGGTAAATCATATGCTGAAATATCCTATCTGAAAAGGCATATCTTGAGCCACGCAAGTGAAAACCAGAATTTCTGTTCGATCTGCAACACAAAGTTTGCAGATGTAGCATCACTGCGTGAACATGTGCAGTCACATGCCTCAGGAGGTGCTAAACCACATAGCTGTATGGTTTGCGGCAAACTTTATACACGTTTAACAATTTTGAAACGCCATATTATGTCCCATTTCGAGGATTCGAATACTATCAATTGCCTGGATAAAATAGAAGACTTGTTGGATACCAACAATGGTGGCTTGAAGAATGCGCGCGCCAACTCGAAACGGGGATCGGCATCAATGTCTTCGAAACGACACGTCTGCTCGACATGCTCGAAAGGCTTCAATAGCCTTGGAAACTTGCACCGCCATTATAGGGTTCACACCGGAGAGAAGCCCTACTCTTGCGAGACGTGCAACCACTCGTTCTCTCAGATCAGCCACTTGAGGCAACATTACCAAGTGCACAGTGGCGAGAAGCACATCTGCCCCGTGTGCAATGTGGCCATCAGCAACGACCGCAACTTCAAGAGGCATCTCAAGCTGCACACCGGCGACCGACCATTCAAATGCGAGACATGTCCAGCCACATTCACCCAACAGGGCCATCTCAAGAAGCACGCCAAGGTTCATGAAACTGACTCGTACATGTGTGGCCAATGCGACATACGCTTTCCTGATCTCTTGCGCTACAGAGAACATGTGAGAACACATGCTGGCGATCGACCTTATGCCTGCTCTCTCTGTGATTCAAAATATTCTGACATTGATCTTCTCAAAAAACACATTGACACACACGATGAGCTGAAAATCAATAATAAGGCGATCAATTCAATGTCGGCTGCAGTGGCTGCTGCTGCTGCTAATCACCGCACTGTTGTACCCAATGTTGCACCCAATGTCAATGTTAATGCCAATGCTACATGCTCATCCACTCAAACCCAAACCCACACTATGCCATTGCCTGTTCACACCCAGAAATTTTTCCCGAGGTCAAAGAGCAGCAGTCATCTGGTCAACAATCGCGTCAGCACCACTGTCAAGAAAAAAGTGACTTGCGAAGTTGGCACCCAGAGCGATTTGATTGACAGTGCTAACTAA
- Protein Sequence
- MSWKKKERRIEIRDATGSKVNPPSPSEDEEKDFEKSYKDNFSNCQEKTITDLDSPSGTQVVGVQEGDVTYIKVNPDPLSMLEVIDNSDNSTTNPLTAVTDNAMNGTSHVMTSNGTDTSTDQSAVNATNRCEENVLMVSVEPEAVSLLEIGTPGTTTTQHSSSNSGAGQDTMPIYQHQQQQQQQQQPHHHPQQTAHHHHNHHHMQPMAPGNMQQMTTMQPMEHHIGNGEPVVHMEIHPQQMHPADEQAAVNQEGMMRPDASWMMSDASGHGRTYSCTSCEETYPTLDQLKQHMTKHIAENPYISKYFDTTVYDNNEFMRSGANPGKPNECTICMESFSKPAAYRQHMRLHAGEKPFNCKECGKSYAEISYLKRHILSHASENQNFCSICNTKFADVASLREHVQSHASGGAKPHSCMVCGKLYTRLTILKRHIMSHFEDSNTINCLDKIEDLLDTNNGGLKNARANSKRGSASMSSKRHVCSTCSKGFNSLGNLHRHYRVHTGEKPYSCETCNHSFSQISHLRQHYQVHSGEKHICPVCNVAISNDRNFKRHLKLHTGDRPFKCETCPATFTQQGHLKKHAKVHETDSYMCGQCDIRFPDLLRYREHVRTHAGDRPYACSLCDSKYSDIDLLKKHIDTHDELKINNKAINSMSAAVAAAAANHRTVVPNVAPNVNVNANATCSSTQTQTHTMPLPVHTQKFFPRSKSSSHLVNNRVSTTVKKKVTCEVGTQSDLIDSAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857919;
- 90% Identity
- -
- 80% Identity
- -