Sfur012520.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chr1:2250241-2261248[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.5 4.9e+02 1.7 0.7 2 23 5 26 5 26 0.94 2 13 0.00025 0.013 16.1 0.6 2 23 669 691 669 691 0.96 3 13 5.1e-06 0.00027 21.5 3.2 1 23 693 715 693 715 0.98 4 13 2e-05 0.001 19.6 4.5 1 23 721 743 721 743 0.99 5 13 5.8e-05 0.003 18.1 2.6 1 23 749 772 749 772 0.97 6 13 0.7 36 5.3 0.3 5 23 785 803 784 803 0.95 7 13 0.00043 0.022 15.4 2.7 2 23 809 831 808 831 0.97 8 13 0.0075 0.39 11.5 1.3 2 23 853 873 852 873 0.96 9 13 0.0013 0.069 13.9 0.7 1 20 879 898 879 901 0.93 10 13 0.001 0.053 14.2 0.5 1 23 909 933 909 933 0.97 11 13 0.014 0.72 10.7 1.8 1 23 939 961 939 961 0.98 12 13 5.1e-05 0.0026 18.3 4.3 1 23 967 989 967 989 0.98 13 13 0.19 10 7.1 9.1 1 23 995 1017 995 1018 0.96
Sequence Information
- Coding Sequence
- ATGCCGCGCGCCACGTGTCCCGTGTGCACTCTGCAGCTGCGCGAGGGCATGACGCTGAGTGAGCACCTGCACACGCACCCCAAGGCGCTCGTAATCGAGGCACTGGCACGCCTGGCGGACGGCGACGAAACGCCACCATTGGCGATCGGTAGCCGCTGTCCGCCGCTGCAGCCCGCCCCGTCTCCCTTGGCGATCGATGCCGCTTGTCCGCCATTGCAGTCTGCCCCACCCCCGCCCCCGCCGCAACTCACCTCCATACTCTATCACCAGCAGTTCCTCACCAGCACCACAACCAGTTTCGTCGACCCCAGTTGCTTGCCACCGCCGCCGCAGCTGATCATGATGGCGCCGGTTCATAGGATGCCACAGCAAACGCCTGTCGTCGCCACAATCAACCAGCAAGTTTCGACCACCACCCAAACTCAACAAACTGCGGGTGTGTTGAATGAGGAAGGGGGAGAAGATGTGGACCAGGAAGATCTAGAAGGAGAGGTGGTTCAGCAAGAAGATGATGAAGAAGAAGGTAATGCACAGTCAACAACAACTACAGCCTTTCAGTATCCACAGTTGGACAATCTCAACTTTCAACGACACACGACACAACTAAACGATGTTGAGAATAATGAAAATGATGATGTTATGATTTGTGAAAGTGGTGCCAATAGAGAAGTTGAAGAAGAGGAAGAACAAGTGATGAATATAGGTACAGTGATAACCGATAGTCAGAAAATTATCTGCAACAACGATCCATTGTATATGGAACACAGTACACCGAATAGTCCCTACGTGGAACGTATTCCAGCAGCATCAGGGTGTAATAAAAGTCCAGTTTATAGGTCAAGCAAAGCGTCTGTCAGTCCAGTCTATGTACAAACCAATGTGCCTGGTACTACTGTGTTTGTGCATAATTCAGCACCCATCAGTCCTATATACGTGCAAACCAGTCTGCCTGTTAGTACAGTATGTGCTCAGAACAAAACACCTGGTAGTCCAATATATGTACAAAGCAAAGCTCCTGGTAGTACAATGTATCAGAGAGGAATGGCGCCTGTTAGTCCAATTTATGCTCAAGATAAAGCTCCTGGTAGAAGTCCTATTCACACAGCAGATAAAGCTCCTGGTAGGAGTCCTATTTACACAGAGAAAGCTCCTGGTAGAAGTCCTATTTACACTGCAGAGAAAGCTCCTGGTAGAAGCCCCATTTACTCAACAGAGAAAGCTCCTGGTAGTCCAGGAGGTGTGACTCCTGTTAGTCCTATCTACACAGCAGACAACGCTCCTGTAAGTCCAATCTATCAAGAAGAACTAGCGGCTGGTAGCGCAGTTGCAGAGGTATCACAACAAGCGCATTCTCCGGCTTCCAGTGGCTACTCGGTGTTTGTTCGCCGTGACCTGGGCACGCCTGGTAGGAGTCCGTCGCGTGACGAGTACATTGTGCCCGGGTTCGAGTTTGATGGCGACGATAGTGATGACGATAACAGTGAGATTGTAGATGATGTGTCGGGTCTGAGTGCGCCGGCGCTCAATATACACACGGATGAGTCGATGCCGCCACGTGGAGAGTTGAGCGGACACGGAACCAATAGCAGCTCTATGTGGCAGTCACGAGAATTGGACGCCCAACAGCCGAGAAAGCAGCAAGCGTCGTCGTCGGCAACGGCAAGCGTCGGCGGCAGCAGCAGCGAAGAGTCGTGGCGACGCGTTCGCGACACGGCGGCGGTCGCCGAGCGACTGTCGGTAAGCGATTCGGCGGCGACGCTTGGTCGCGCGGGCGGAAAATCGCCGCCGACGGTGACGGACGCTGACGCCACTGCGGCGACGGCGGCGACGCCCGGCAATCAGCTGATTCAGTTTAGAGACGCGACCGGTGAGCCGTTCAGCAGCGTTTGCTTCATACAGCCGAAAAAGGAACAGGTGAAAGAGGAAGCGTCCAGCACAATAAAGTTGGACGACATCAAGCAGGACGTGAAGGTGGTGAAGAAGGAGGCGAAACGTCGCATCAGGACGTGTGTCACCTGCGACCAGGTGTTTCCCACCGCTGACGAATTCAATCATCACATCAAACGCGTGCATCCGTTCGAGTGCAAGGTATGCGGCCGATGCTTTATGCGCTCTTCGGGATTGACTCTGCACCAGAAACGTCATCTGAAAATCAAGCCCTACCGCTGCAACTACTGCGAAAAATCGTTTGTCACCAACCAAAAACTGACCGAACACCACAACACACACACCGGCCACTCTCCCTTCAAGTGCAACCTTTGCGAGGCTACATTCAAAAGATACTCGAACTTAATCCAACACAAAAACCGGTTCCACCTGAAAATCAAACGCAAACCCAAGGATTACTTTTGTGAGTGCGGTGAAGTGTTTCATTCGCCCCTGAAACTGGCTTGGCACAAAGAAAGCCACGACCCCTGTCCGAAAAAGTGTACCTACTGTAGTTCTAGGTTTGTACATGAGGCTAGTTTGACGAGACATATACGGAAAGCACACGATCCACTGTATATACCTGTGGTTAAGAAGTTTAAAGTGTTGGAGCCGACTAGGGAGAACGTGGAGTGTCCGATTTGTCATAAGGTGTGTTTAAAGGGCAGTCTCAGGAACCATATGGTGGTACACAGTGGGGTGAAACCGTATGCGTGTAGTTCGTGTGGTAAAAGGTTTTTTTCGAAGTGGAACATGAAGTTGCACATGTGGGTGCACGGTTCGCGTAGTTCGATGCCGTTCAAATGCGATGTGAAATCTTGTAAAGCGTCTTTTGTGCGCGATAGTGATTTGCAAGATCATCTCAGATCGCATAAAAATCTGAGACAGTATTCGTGTAACTATTGTGGTAGTCAGTTTTTGAGAAAGTTCAACTGGGTGAGGCACACTAGGGAACACGAACAGGAGAAAAAGCATGAGTGCAAGGTGTGCGGGAAAAAGTTTCATCGCGGGTATTATTTGACGGAGCATATGAGGGTGCATACCGGTATGAAACCGTTTACGTGTCACATATGCTCGAAACAGACGGCGACCAAAACCAATCATAACAAGCATTTGAAAACGCATCATGCGAGGCAGATTATTGCTAGTGAGAATTAG
- Protein Sequence
- MPRATCPVCTLQLREGMTLSEHLHTHPKALVIEALARLADGDETPPLAIGSRCPPLQPAPSPLAIDAACPPLQSAPPPPPPQLTSILYHQQFLTSTTTSFVDPSCLPPPPQLIMMAPVHRMPQQTPVVATINQQVSTTTQTQQTAGVLNEEGGEDVDQEDLEGEVVQQEDDEEEGNAQSTTTTAFQYPQLDNLNFQRHTTQLNDVENNENDDVMICESGANREVEEEEEQVMNIGTVITDSQKIICNNDPLYMEHSTPNSPYVERIPAASGCNKSPVYRSSKASVSPVYVQTNVPGTTVFVHNSAPISPIYVQTSLPVSTVCAQNKTPGSPIYVQSKAPGSTMYQRGMAPVSPIYAQDKAPGRSPIHTADKAPGRSPIYTEKAPGRSPIYTAEKAPGRSPIYSTEKAPGSPGGVTPVSPIYTADNAPVSPIYQEELAAGSAVAEVSQQAHSPASSGYSVFVRRDLGTPGRSPSRDEYIVPGFEFDGDDSDDDNSEIVDDVSGLSAPALNIHTDESMPPRGELSGHGTNSSSMWQSRELDAQQPRKQQASSSATASVGGSSSEESWRRVRDTAAVAERLSVSDSAATLGRAGGKSPPTVTDADATAATAATPGNQLIQFRDATGEPFSSVCFIQPKKEQVKEEASSTIKLDDIKQDVKVVKKEAKRRIRTCVTCDQVFPTADEFNHHIKRVHPFECKVCGRCFMRSSGLTLHQKRHLKIKPYRCNYCEKSFVTNQKLTEHHNTHTGHSPFKCNLCEATFKRYSNLIQHKNRFHLKIKRKPKDYFCECGEVFHSPLKLAWHKESHDPCPKKCTYCSSRFVHEASLTRHIRKAHDPLYIPVVKKFKVLEPTRENVECPICHKVCLKGSLRNHMVVHSGVKPYACSSCGKRFFSKWNMKLHMWVHGSRSSMPFKCDVKSCKASFVRDSDLQDHLRSHKNLRQYSCNYCGSQFLRKFNWVRHTREHEQEKKHECKVCGKKFHRGYYLTEHMRVHTGMKPFTCHICSKQTATKTNHNKHLKTHHARQIIASEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -