Basic Information

Insect: Sogatella furcifera
Gene Symbol: -
Assembly: GCA_014356515.1
Location: Scaffold147:37741-38709[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.8e-05 0.00091 19.8 1.3 1 23 9 31 9 31 0.98

2 11 3.6 1.9e+02 3.1 0.6 15 23 40 48 37 48 0.93

3 11 4.9e-05 0.0026 18.4 3.5 1 23 54 76 54 76 0.98

4 11 5.9 3.1e+02 2.4 0.2 15 23 85 93 83 93 0.92

5 11 4.7e-06 0.00025 21.6 0.6 1 23 99 121 99 121 0.98

6 11 7.9 4.1e+02 2.0 0.2 15 23 130 138 128 138 0.91

7 11 2.2e-06 0.00011 22.6 0.2 1 23 144 166 144 166 0.98

8 11 5.3e-05 0.0027 18.3 0.5 1 23 172 194 172 194 0.98

9 11 0.00033 0.017 15.8 7.4 1 23 200 222 200 222 0.97

10 11 2e-06 0.0001 22.7 0.9 1 23 228 250 228 250 0.98

11 11 0.006 0.31 11.8 0.4 1 23 256 279 256 279 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.8e-05	0.00091	19.8	1.3	1	23	9	31	9	31	0.98
2	11	3.6	1.9e+02	3.1	0.6	15	23	40	48	37	48	0.93
3	11	4.9e-05	0.0026	18.4	3.5	1	23	54	76	54	76	0.98
4	11	5.9	3.1e+02	2.4	0.2	15	23	85	93	83	93	0.92
5	11	4.7e-06	0.00025	21.6	0.6	1	23	99	121	99	121	0.98
6	11	7.9	4.1e+02	2.0	0.2	15	23	130	138	128	138	0.91
7	11	2.2e-06	0.00011	22.6	0.2	1	23	144	166	144	166	0.98
8	11	5.3e-05	0.0027	18.3	0.5	1	23	172	194	172	194	0.98
9	11	0.00033	0.017	15.8	7.4	1	23	200	222	200	222	0.97
10	11	2e-06	0.0001	22.7	0.9	1	23	228	250	228	250	0.98
11	11	0.006	0.31	11.8	0.4	1	23	256	279	256	279	0.96

Sequence Information

Coding Sequence: ATGACACACACAGTGGACAAATCTTACATCTGTAAGTTCTGTGAATACAAGACCACTACATCAAGTGCTTTGAAGGTTCATGTCAGGACACACACAGGGGACAAACCTTACATATGCCATTTGAAGGTTCATGTCAGGACACACACAGGGGACAAACCTTACATATGTGAGTATTGTAGTTACAAGACCAACAAGTCAAGCCATTTGAAGGTTCATGTCAGGACACACACAGGGGACAAACCTTACATCTGTTCTTTGAAGAAACATGTCATGACACACACAGGGGGCAAGCCCTACATGTGTGAGTTATGTGGGCACAGCAGCACAACATCAAGTGCTTTGAAGGCACATGTCATGACACACACAGGGGACAAGCCTTACATATGTGCTTTGAAGAAACATGTCATGACACACACAGGGGACAAGCCCTACATGTGTGACTTATGTGGGTACAGCAGCACAACATCAAGTGCTTTGAAGGCACATGTCATGACACACACAGGGGACACGCCTTACATATGTGAGTTTTGTGATTACAAGACCACTACATTAGGTGCTTTGAAGAAACATGTCATGACACACACAGGGGACAAGCCATGCAAATGTAAGTTTTGTGATTATAAATGCACCCAATCAAGTAGTTTGAAGGTACATGTCAGGTCACATACAGGGGACAAGCCTTACATCTGTGAGTTATGTGATTACAAGACCACAACATCAAGTGGTTTGAAGAGACATGTGAGGACACACACAGGGGACAAACCTTACATGTGTGAGATTTGTGATTATAAGAGCACAAAATTAATTTTTTTGGAGAATCATCTTATCAGGTCTCATGCAATGGAACGTTCGTCAACTGTCACTATTTGA
Protein Sequence: MTHTVDKSYICKFCEYKTTTSSALKVHVRTHTGDKPYICHLKVHVRTHTGDKPYICEYCSYKTNKSSHLKVHVRTHTGDKPYICSLKKHVMTHTGGKPYMCELCGHSSTTSSALKAHVMTHTGDKPYICALKKHVMTHTGDKPYMCDLCGYSSTTSSALKAHVMTHTGDTPYICEFCDYKTTTLGALKKHVMTHTGDKPCKCKFCDYKCTQSSSLKVHVRSHTGDKPYICELCDYKTTTSSGLKRHVRTHTGDKPYMCEICDYKSTKLIFLENHLIRSHAMERSSTVTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -