Basic Information

Insect: Sogatella furcifera
Gene Symbol: -
Assembly: GCA_014356515.1
Location: chr13:4399477-4410776[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.8 1.5e+02 3.4 0.2 3 23 248 269 246 269 0.93

2 10 4.7e-05 0.0024 18.4 1.5 1 23 275 297 275 297 0.99

3 10 3e-05 0.0015 19.0 0.6 1 23 303 325 303 325 0.96

4 10 1.7e-05 0.00086 19.8 3.2 1 23 331 353 331 353 0.98

5 10 5.4e-05 0.0028 18.2 0.2 1 23 360 382 360 382 0.98

6 10 5.3e-06 0.00028 21.4 2.5 1 23 388 410 388 410 0.98

7 10 0.036 1.9 9.4 6.1 1 23 416 438 416 438 0.93

8 10 1.5e-05 0.00078 20.0 1.3 1 23 444 466 444 466 0.98

9 10 0.00027 0.014 16.0 1.7 1 23 472 494 472 494 0.97

10 10 1.3e-07 6.6e-06 26.5 0.6 1 23 500 523 500 523 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.8	1.5e+02	3.4	0.2	3	23	248	269	246	269	0.93
2	10	4.7e-05	0.0024	18.4	1.5	1	23	275	297	275	297	0.99
3	10	3e-05	0.0015	19.0	0.6	1	23	303	325	303	325	0.96
4	10	1.7e-05	0.00086	19.8	3.2	1	23	331	353	331	353	0.98
5	10	5.4e-05	0.0028	18.2	0.2	1	23	360	382	360	382	0.98
6	10	5.3e-06	0.00028	21.4	2.5	1	23	388	410	388	410	0.98
7	10	0.036	1.9	9.4	6.1	1	23	416	438	416	438	0.93
8	10	1.5e-05	0.00078	20.0	1.3	1	23	444	466	444	466	0.98
9	10	0.00027	0.014	16.0	1.7	1	23	472	494	472	494	0.97
10	10	1.3e-07	6.6e-06	26.5	0.6	1	23	500	523	500	523	0.97

Sequence Information

Coding Sequence: ATGTCTGAAACCATTCTTTGTCGATTATGTGCTCATCAAACCGATAATTTTGTTGGAATCTTTGAAAGAGAAGGCAAAAACTTGGATCTGGTGAAGAAAATCTCGCAGTGTCTACAAATTTTGTTATTTCCTGATGATGTCCTTCCAAAAGAAGTATGCGAGGAATGCTGTGTTCGACTGGACGAAAGTTTTAAATTTCATCAATGCTGTTCGCAAGCTCAGCAATATTTGATTTCTCTGTTCAGTGCGGATCAAACTCAACAATTAATCAAATCCGATTTGATCCCTGGAATGGATATTTCAGCCCCTTTACAAGAAGACATTGTTAATGATCAAAATCCTGCTTTGGATTACAGGGAAATTAGTTTGTTGAAAAATTCTGATGCCAACAAAACTACTCTGACTATAGCAAATCGACAAAATGAGAATGTATGTGACCAATTCGCTAAAATTGAAAGCATGAACGATGTAACAAATCTCCCAACCCCTTCTCTAACCGATTTGGACAATGTACCAACAAACAGTGGAAAGGGAGATCTTAAGTCGAAAGATTCTCAAACAGTTGTTAAAACTACTGAAATGAAATTACGCAACAGACCATTGAAAAATATCAATGAAGTGTCAAGAGAAGGAGTTGATGACTGCTTTGATAGTGATGATGGTTTTTCTGACTCTGGAGGTAAAGATGATGAAGAACAATTTCAATCCAGATCTACCAAAGGTGAACGCAAAGGATGGTTTTGCTACGAATGTTCCTCAATTTTACCAACTCTGCCGTCCTTGAGAGATCACTACAAGAAAGAACACAATAGACAGCCACTATTCAAATGCGAGCTGTGTGAAAAGGTGTATGAGAGGTACAGAAGCTACGCCAGGCATATTAAAACACACGATGATAATAAAAAATACAGTTGTGACGTATGCGGCAAACGTTTCTCGCAAAAGGCAGTTTTGAAAAGTCACAGCACCGTGCATAGCGGTGAGAGACCATTCCCCTGTCAACAGTGTGGCAAAACTTTCAAGCAATTCAGCTCGCTATTCATGCACAAAAAGTCGCACTGCGGCTCGCAGGCCAAGTTCCCGTGTACGGTTTGTCCGAAATCATTAACAACTAAGCAAGCGCTGATTGTTCACCTGAAAAATCACTCTGGTGAACGCGATTTCGTTTGTGACGTATGTGGAAAGAGTTTTGTATCCAAGAGCAGTTTTCACTACCACCTATCAACACACACGCAGAAGAAGTCACACGTCTGTCATGTATGCGGAAAGACTTTCAGCTGCACAAAACTGCTGACAAAGCATGCCACTCTGCACACGGGTGTAAAGCCGCACCAGTGCGATGTGTGCGGAAAGCAGTTTAGGCTGCAGAGTGCGTTGAAGGAGCACAATCGCATACACACGGGGGCCATGCCCTATGCTTGCGAACACTGCGGGAAACAGTTCAGGTTCAAGGGCATTTTGACGGTTCATTTAAGACAACACACCGGCGAGCGTCCCTATGTTTGTTCAGAGTGTCCTCGCACTTTCACCAACTGGGCCAATCTCAATAAACACGTCAAACGGAAACATAAAAACGTTCCGCAATCCTCGGAGATGTCTCAGCAGCCCGCAAAACCAGCCTTAAACCAGGAAAAACACCCTACTTGTGAAACGAACCTCTTAAATACGCCACAACTGATACGAGTGGCGAACGATCGTTCATCGTTCACAAAACATGAGCGAAATGTATGTGAAATTTCAAATTCGGTTCCAAAAGGGTGTGAAATTCCTTCTTCGAATATCAAACGATGTGAAATAATGTCGTCTTCAGTTCATAAAGTTTGTGATTACTCAGCTACTAGTTGTGAAATTCCATCAGTAGTTCATAAAAGTTGTGAAATTCCATCTGTAGTTCATAAAAGTAGTGTAATACCGTCTTTAGTTCATAACGGATATGAAATGCCATCTTTAGTACATAAAGGATACGAATTGTCGACATCTTCAGTTCATAAAGTTAGTGATATTTCATGTACGGTACAAAAAAGTTGTGGTGGTATTTCAACAGTTCATAAAGGATGTGAAATGCCTACAAGCGCATATGCGAATTCGTTGGGTTTCGGTTATAAAATGAGTGAAAATAGTGCCTTGGTGAATGGTGAAACAATACTTAGGACTCAGAGTAATATTCCGGTGACAGAAATAGGTGGTTATTATACAAGTAATGGTTTGCATCTCTTGCAGAATCAGAATAATTTGAATAGTTAG
Protein Sequence: MSETILCRLCAHQTDNFVGIFEREGKNLDLVKKISQCLQILLFPDDVLPKEVCEECCVRLDESFKFHQCCSQAQQYLISLFSADQTQQLIKSDLIPGMDISAPLQEDIVNDQNPALDYREISLLKNSDANKTTLTIANRQNENVCDQFAKIESMNDVTNLPTPSLTDLDNVPTNSGKGDLKSKDSQTVVKTTEMKLRNRPLKNINEVSREGVDDCFDSDDGFSDSGGKDDEEQFQSRSTKGERKGWFCYECSSILPTLPSLRDHYKKEHNRQPLFKCELCEKVYERYRSYARHIKTHDDNKKYSCDVCGKRFSQKAVLKSHSTVHSGERPFPCQQCGKTFKQFSSLFMHKKSHCGSQAKFPCTVCPKSLTTKQALIVHLKNHSGERDFVCDVCGKSFVSKSSFHYHLSTHTQKKSHVCHVCGKTFSCTKLLTKHATLHTGVKPHQCDVCGKQFRLQSALKEHNRIHTGAMPYACEHCGKQFRFKGILTVHLRQHTGERPYVCSECPRTFTNWANLNKHVKRKHKNVPQSSEMSQQPAKPALNQEKHPTCETNLLNTPQLIRVANDRSSFTKHERNVCEISNSVPKGCEIPSSNIKRCEIMSSSVHKVCDYSATSCEIPSVVHKSCEIPSVVHKSSVIPSLVHNGYEMPSLVHKGYELSTSSVHKVSDISCTVQKSCGGISTVHKGCEMPTSAYANSLGFGYKMSENSALVNGETILRTQSNIPVTEIGGYYTSNGLHLLQNQNNLNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -