Basic Information

Insect: Sogatella furcifera
Gene Symbol: -
Assembly: GCA_014356515.1
Location: chr12:551734-562075[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.8e-05 0.0035 17.9 0.5 1 23 167 189 167 189 0.99

2 9 0.026 1.4 9.8 2.3 1 23 210 232 210 232 0.97

3 9 4.8e-06 0.00025 21.6 0.5 2 23 290 312 289 312 0.94

4 9 0.00034 0.018 15.7 2.3 2 23 439 460 438 460 0.96

5 9 2.2e-06 0.00011 22.6 0.3 1 23 466 488 466 488 0.98

6 9 0.00013 0.0068 17.0 4.3 1 23 494 517 494 517 0.96

7 9 1.1e-07 5.4e-06 26.8 1.1 1 23 523 545 523 545 0.99

8 9 7.9e-07 4.1e-05 24.0 2.2 1 23 551 573 551 573 0.99

9 9 3.4e-05 0.0018 18.9 5.4 1 23 579 601 579 601 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.8e-05	0.0035	17.9	0.5	1	23	167	189	167	189	0.99
2	9	0.026	1.4	9.8	2.3	1	23	210	232	210	232	0.97
3	9	4.8e-06	0.00025	21.6	0.5	2	23	290	312	289	312	0.94
4	9	0.00034	0.018	15.7	2.3	2	23	439	460	438	460	0.96
5	9	2.2e-06	0.00011	22.6	0.3	1	23	466	488	466	488	0.98
6	9	0.00013	0.0068	17.0	4.3	1	23	494	517	494	517	0.96
7	9	1.1e-07	5.4e-06	26.8	1.1	1	23	523	545	523	545	0.99
8	9	7.9e-07	4.1e-05	24.0	2.2	1	23	551	573	551	573	0.99
9	9	3.4e-05	0.0018	18.9	5.4	1	23	579	601	579	601	0.97

Sequence Information

Coding Sequence: ATGAAGATATACCCGACGCAAGGGCAGCATGAGTTGCAGGTGCTGAATAGGACATCATCACAGCCTCTGCCTCCTTTGAAAAAAGTCCTCTCCAGCCAGTCAATGATGGTTAGAAACAAGTTCTCAGATAGTCCTGGAATTATGGTCGAACTACAAAACTCCGACCTACTTGACACCTCGCAAGTGCCCAACAACTGTATCAAACCCGAGCACCTGGACAACAACACACCCGTTGTCATGACAACAGCGGCCTCGTCCACCCCGCCCACCACCTCTTTACAATCGCACCATCCACCCTCCACTAACCCATCACTAAATCAATCCGGTCCTACAGCTGCCGACGATTTAGATTCAGAAGACTACGACGCCGAAAACGACACAGCGCGCGCGGCCTCACGCAAATCGCTGCCGCACAAGAAACGCTTTCCGCGCAAACTCAAGGGTCAGGGGGGAGGGGCGCCTTCGGGAGGTGCAGTGCGCAACCCTGCGCAAAAGACGTACAAGTGCGCAAAGTGCGGCGAGAGTTGCGGCACGCAGGCACAGCTGGCTGCGCACAAGTTGACACATTTGGCGCCGGTTAAGAGGGGTGCGGCGGGGGCGGGGTCGGGGACAGGTTCGGCGGCCATTTTCAACTGTGAACTGTGTCAGAAACAGTTTGGAACGCAGTTGAAGTTTTTTGAACATTTAAAACAGCACTATGAGCCGGGTGGTGGGGTGATGGGTGTGGTGGGGATGGAGGGGTTGAGGGTAGAGGGGGAAGGAGTAATGGGAGGGATGGTGGGCAGTGTGCAGCAGGAGATGGGCAAGGAGATGGTTGAACAGCACAACTCCATGAAAGTAGAAGCGGCGGTGACCTCCACAGGCCTGACCTGCGCGCACTGTGGCAAGGTTTTCCGCCGGCAGAAGGCCCTGGAGACCCACGTGAGTGTGGCGCATCCCAGTCAGGACGAGATTGAGGAGTTTAGCGAACCCGAGGACATGATGGAGGGCATCAGGCATGTGGTCAACATGCCCGCTGTCGATAGTGGGGATGAGGAGGGTGGTGAGGAGAAGATGAGATGGAGGTACCAACTGAACGCATCCGCCTCCAACTACACTTCGATGGGCGGCGATATGGGGGCGGCGCCCATGCAAACGCTGCAGGACATGCACACCCTGGAGGCGGCAGCTGCAGCGGCTCAGCCGCCCCCCGCTACCCTGCCACCCCCGCAGGCACCTGATGGTGGACAGGGTGAGGAGGCGGCAGGGGGTGGCACCGTGCCTAAGGGCAGTGTTAAGGTGGACTCAGTCGACGGCGAAAAACGTACAGCGCTGATGTGTCTGGAATGCAATCGCGTGTTCAACCATCGCAACTCTCTTCTCTACCATCTGAGATCGCATTCGGGGTTGAGGCCGCACCAGTGTGACGTATGCGGCAAGGGATTCATATCGGGCAGTGCGCTCAAGGTTCACATGCGCCTACATTCGGGTGACAAGCCGTACAAGTGCGAGCATTGTTCGCGCCATTTCAGGCAGTGGGGAGATCTCAAGTACCACGTCACCTCCCTCCATTCCGATCAGAAACAGTTCCAGTGCGAGTACTGCGGAAAGGATTTTGCGCGCAAGTACTCGCTGAATGTGCACCGACGCATACACACCGGGGAAAAGAACTACAAATGCGAGTTTTGCGGAAAAACGTTTCGCGCGTCGTCTTACCTGAAGAACCATACCAGGATTCATACCGGCGAAAAACCGCACTGCTGCGATCTGTGCGGCAAGCCGTTCCGGGTGCGTTCGGACATGAAGCGACATCGGCGCACGCACACCAAGGACAGCACGGCGGCCGCCGCCTACCTGACTGCTAGGGATGAGGACGACGAGGTCGAGTTGATTGAGGACGAGGCTGCCAGGATGCACCAGGAGTCGCGGCTGCACCACCAATCGCACCTGGTTGAGGGCGAGGACGAGAGTTCGGAGACGATACTGCCCGACCAGGCGCCCATTCCGTTGAATTTGAACATAAAGGGTGCCGACGTGGGGGAGGGCGAGGAGGAGCTGGTGTACACGACGACGGGCGCGAGGGGCGCACACCACTCGGTGGACAGCAGGGATGGCACCCTCTATGTGTGGATACCGGCCGCGCCCGATAGCATACTGTCTGATGAGTAG
Protein Sequence: MKIYPTQGQHELQVLNRTSSQPLPPLKKVLSSQSMMVRNKFSDSPGIMVELQNSDLLDTSQVPNNCIKPEHLDNNTPVVMTTAASSTPPTTSLQSHHPPSTNPSLNQSGPTAADDLDSEDYDAENDTARAASRKSLPHKKRFPRKLKGQGGGAPSGGAVRNPAQKTYKCAKCGESCGTQAQLAAHKLTHLAPVKRGAAGAGSGTGSAAIFNCELCQKQFGTQLKFFEHLKQHYEPGGGVMGVVGMEGLRVEGEGVMGGMVGSVQQEMGKEMVEQHNSMKVEAAVTSTGLTCAHCGKVFRRQKALETHVSVAHPSQDEIEEFSEPEDMMEGIRHVVNMPAVDSGDEEGGEEKMRWRYQLNASASNYTSMGGDMGAAPMQTLQDMHTLEAAAAAAQPPPATLPPPQAPDGGQGEEAAGGGTVPKGSVKVDSVDGEKRTALMCLECNRVFNHRNSLLYHLRSHSGLRPHQCDVCGKGFISGSALKVHMRLHSGDKPYKCEHCSRHFRQWGDLKYHVTSLHSDQKQFQCEYCGKDFARKYSLNVHRRIHTGEKNYKCEFCGKTFRASSYLKNHTRIHTGEKPHCCDLCGKPFRVRSDMKRHRRTHTKDSTAAAAYLTARDEDDEVELIEDEAARMHQESRLHHQSHLVEGEDESSETILPDQAPIPLNLNIKGADVGEGEEELVYTTTGARGAHHSVDSRDGTLYVWIPAAPDSILSDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -