Sfur011669.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chr4:21170251-21181501[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0071 0.37 11.6 6.2 1 23 87 109 87 109 0.96 2 13 0.018 0.92 10.3 2.3 2 23 146 168 145 168 0.95 3 13 0.00068 0.035 14.8 1.1 1 23 174 196 174 196 0.96 4 13 0.031 1.6 9.5 0.2 1 23 202 224 202 224 0.95 5 13 0.063 3.3 8.6 5.9 1 23 230 252 230 252 0.93 6 13 3.9e-05 0.002 18.7 0.7 3 23 260 280 258 280 0.97 7 13 1.6e-05 0.00082 19.9 2.1 1 23 286 309 286 309 0.97 8 13 0.00037 0.019 15.6 4.9 1 23 438 461 438 461 0.96 9 13 0.00011 0.0056 17.3 1.4 1 23 506 528 506 528 0.96 10 13 0.00017 0.0086 16.7 0.1 1 23 534 556 534 556 0.98 11 13 0.0025 0.13 13.0 3.9 1 23 562 584 562 584 0.94 12 13 2.7e-07 1.4e-05 25.5 0.5 1 23 590 612 590 612 0.98 13 13 1.1e-06 5.5e-05 23.6 1.0 1 23 618 641 618 641 0.97
Sequence Information
- Coding Sequence
- ATGAATGGGAATGAAAAAAAATTGGAACTATCTACTGATTTTCCAGAGAGCTCTTACTTTGGAGAAAATGAAAGTATTATCAAGGAAGTTGTAAAATATGTGAGACAGAAGAATGGATTGAGTGATAATGAGACTTTGTCTGTTAAATTGAAATCTAGTCAAAGAAAAAGAGGATGTGAATCTCAAAACAATTGTGCTAATTCGCATAAAATTGATATGAAAGTTATAAAACTGCATCCAGCTATTGTTGGAAAAGGTTTCTATTGTCAAAAATGTAATTTGAGGTACAAACACAAGCATAATTTTGAGGCACATGTCGAAAATCATAAGTCTGAGTCTGAGAACAAATTGAAAGTTGAAGAAACATACAAGAAGACTACTTCTAAAACAGCACAAATCAAGTACAAATTTGATAGTTCAACAAAACAAAGCCTTTACTGTGAAATGTGCAATAGATATTTGAAGACTAGTAGTGGCTACAACTATCACATGAAACACGTTCATCTTGGCGTGAAGGAGCATGCTTGTGACATATGTGGGCGATGCTTTGCTGCAAAATTTGCAATGATAGAACACAGACGCATTCACACCGGCGAGCGGCCCTTCATATGTCAGGTGTGTGGCAAGGCAGTGCGCACTAGAAACATTCTCGATTCGCACCTCAAGTTGCACAGTGATGAACGGCCCTACAGCTGTCAAACCTGCCACAGAACATTCAAACACCTCAATGTATTTCGTAGGCACAATGTTATACATACCGGCGAGAAAAAGTATGGTTGTGAATTATGTGGAAAGAGGTTCACTTCAAGCACTGAAATGAAAGCACACAAATTAACCCATAATGGTTTAAAACCATTCGCATGTCCTCTGTGTGATTCAACATTCAATCAAAAACGCTATTTGAAAAAGCATCTGCGTAAAACACATTGCCTTGAATCAAAATCAGCTCGTAATATTTTGCAGAATTTTGCACCAAATGAACCCAAACATATTTCGGCAGCTGATTATAAAACTCCACAGCTCAATGCAGTGAATGCAACTTTCGCTTCTCTTGATGTTCTGCAGAATGTGGGAGCTACAATGAATGAAACTGATGAAGCTTCAGGCTTTAGAATCTCTGATTTTGGAGAAAATGGAAGTATCATCAAGGAAGTAGTAAAATTTGTGAGGCAGAAGGTTGGATTGAATGATAAAGAGACTTTGGCTGTAAGAGTAAAATCTAGTCAAAGAAAGAGAGAAAATGAATGTGACAACAAACGTGCGATTGATATAAAAGGAACAAAACTGAATTCAGCTACTGTTGGACATGGCTACTATTGTAAAGAATGTAATTTGAGGTACAAACACAAACATAACTTTGAGGCACATATTATGGAAAATCATAAATCTAGAAACAGATCAAGTGTTGAAGAGACATGCATAAATATTGCTGATGTTTCTACAGCTCATGCCAAATACAAAGATGATAATGGAACAGAACAAATTATTAAAAAAAGTGAAAAAACTTCGAAGAAGCATGCATGTGACATTTGTGGACAATGTTTTGGTCGCAAAGGAGCAATGATGGAGCATAGACGCATCCACACAGGTGAGCGGCCCTATGTATGTCAGATTTGTGGCAAGGCAGTACGCACTTCCGGCATTCTCAACAAGCACCTCCAGTCTCACAGCAGCGAACGGCCCTACAGCTGCCAAACCTGTCACAGAACATTTAAATACTCAATTTCACTTGTCAGGCATAATTTTATTCATACCGGAGAGAGAAACTATGTTTGTGAATCATGTGGAAAGAGTTTTACTGTAAGCAGTGATTTGAGATCCCACCAATTAACCCACAATAGTTTGAACCCCTACCAATGCCCAATATGTGATTTATCATTCAGTGTTAAAAAATATTTGAGAAATCATCTGCGTTTAAAACATTGCCTTGAATTAAAAGCAGCGATTACGATTGTGGAGAATATTGCACCACCTGAGACCAAATAA
- Protein Sequence
- MNGNEKKLELSTDFPESSYFGENESIIKEVVKYVRQKNGLSDNETLSVKLKSSQRKRGCESQNNCANSHKIDMKVIKLHPAIVGKGFYCQKCNLRYKHKHNFEAHVENHKSESENKLKVEETYKKTTSKTAQIKYKFDSSTKQSLYCEMCNRYLKTSSGYNYHMKHVHLGVKEHACDICGRCFAAKFAMIEHRRIHTGERPFICQVCGKAVRTRNILDSHLKLHSDERPYSCQTCHRTFKHLNVFRRHNVIHTGEKKYGCELCGKRFTSSTEMKAHKLTHNGLKPFACPLCDSTFNQKRYLKKHLRKTHCLESKSARNILQNFAPNEPKHISAADYKTPQLNAVNATFASLDVLQNVGATMNETDEASGFRISDFGENGSIIKEVVKFVRQKVGLNDKETLAVRVKSSQRKRENECDNKRAIDIKGTKLNSATVGHGYYCKECNLRYKHKHNFEAHIMENHKSRNRSSVEETCINIADVSTAHAKYKDDNGTEQIIKKSEKTSKKHACDICGQCFGRKGAMMEHRRIHTGERPYVCQICGKAVRTSGILNKHLQSHSSERPYSCQTCHRTFKYSISLVRHNFIHTGERNYVCESCGKSFTVSSDLRSHQLTHNSLNPYQCPICDLSFSVKKYLRNHLRLKHCLELKAAITIVENIAPPETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -