Sfur002166.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chr5:7647122-7653679[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.3e-05 0.0048 17.5 1.4 1 23 66 88 66 88 0.98 2 19 0.0022 0.11 13.2 1.3 1 23 94 116 94 116 0.97 3 19 4e-05 0.002 18.7 0.1 1 23 122 144 122 144 0.99 4 19 0.16 8.1 7.4 5.4 1 23 150 172 150 172 0.97 5 19 7.8e-07 4e-05 24.0 3.5 1 23 178 200 178 200 0.98 6 19 5.7e-05 0.003 18.2 0.7 2 23 207 228 206 228 0.97 7 19 0.41 21 6.0 2.4 1 23 232 255 232 255 0.96 8 19 1.1e-05 0.00057 20.4 0.8 1 23 261 284 261 284 0.98 9 19 1.4 75 4.3 2.4 1 23 291 314 291 314 0.92 10 19 0.044 2.3 9.1 2.4 1 23 411 433 411 433 0.98 11 19 0.0027 0.14 12.9 2.5 2 23 440 461 439 461 0.97 12 19 3.5e-05 0.0018 18.9 1.0 1 23 467 489 467 489 0.98 13 19 3.9 2e+02 3.0 4.8 1 23 495 517 495 517 0.96 14 19 5.1e-07 2.6e-05 24.6 3.3 1 23 523 545 523 545 0.98 15 19 2.8e-05 0.0014 19.1 0.5 2 23 552 573 551 573 0.97 16 19 0.03 1.6 9.6 0.9 1 23 577 599 577 599 0.97 17 19 2.6 1.3e+02 3.5 8.8 2 23 606 628 605 628 0.94 18 19 0.019 1 10.2 2.4 1 23 634 656 634 656 0.98 19 19 0.0038 0.2 12.4 0.2 1 23 662 685 662 685 0.97
Sequence Information
- Coding Sequence
- GCTCAAGTTTCGGCTGAAAATCCAGTCGAAGGAGGAGGTGTATTTGGGGAGGAGGAGGAGGAGGGGGCGGACAAACAAGGCCTGCACTCTATATTCTCTGCCTCGACTCTCGACTCAACACTGGCAAACAGGGTGGCCTCCACTGTCGAACACGTAGTTCAAAACTCTGTGGTCTTCAACCAGGGCACGGCCAACTACAGTTGTGCGCACTGCGACTATGTGTGCACAGACGATGGAGAGCTGAGGATTCACATTCGCTCGCACAAGGGTGAAAAACTGTTCGCTTGTAAGCTGTGCGAGTACAAGAGTAGTCGGGAGAAGGATTTGGACAGGCATATGTCGAAGCACACCGGTGTGAAGGAGTTTCGATGTGAGATTTGCGGTTATGAAACTCCGCGCGCGGATGCGTTAAAACTGCATGTTAGAAAGCATACCGGGGAAAAACCCTATGTGTGTAAGTATTGTGACTATAGGTGTGCCGATCCGAGTGTGTTGAATTGTCACCATAAAGTACACAACAACCAGAGAGCGTTTGTTTGTAAGGAGTGTGGACATAAGTTTATTAGGTCGACCGATTTGAATCGTCACATGAAAAAGCACACGGGTGAAAAGCCTATCCAGTGTGAGTTGTGTAGCTACAAAACTAACAGACCCAGCGCTTTGAAAAATCACATGCGTCAGCATTCCAACGAGTACAATTGTGAGTACTGTGAGTTCACTTGTTGGTTGAAGCGCGAATTTACAGCGCACATGAGGGCGACGCACGCGCAACACAAGCCGTACAAGTGTGACGTGTGTGAGTATAGTAGTGTGCGTGCGAAAGATTTGAAGAGGCATCAGCGCAGGATTCATAGGAAGAATGAGTTGCCGTACAGTTGTCGGTACTGTAAGTTTAGGACGGATCGCAGGAAGCGACTGGTGGAGCATGTCGGGAAAAAGCATGAAGATTGGGCGCTAGAAGACGAAATGGAAGTGGAGCTTGCACGAACATCGGAGGAAAGCGGAGGCGAAGAGGAGGAAGATGAAGAGGGGGACGAGGAGAACTACCACCATTTTGAACCGATGGTGGAGATAGACTTGGAGAAACAAGTGGACGAAGTAGTTGTGATAAAAATGGAGCCAGATGAGGAAGACATGGAAGAAGAAGGAGTAGGAGATGAAGAATGCCTTGCTAGTTACGGCGAAGAGTCAAACTATTCCAACTCGCCGTCGAATCGAAATCATGATAGGTTCATTTGTGCACATTGTAACTTTGAAACGGAGAAAAAGTATGTGTTGAGAAACCACCTGCAAACACACAGCGAGGAAAAGGTGTTGAGTTGCGAGCTGTGCGACTATCGGTGTGCTAGACAAAACGATATGGACAGGCATCAGAGGAAACACACTGGCGACAAACCTTACAGTTGCCAGTATTGTGACTACGAAACGACGAGGTCGGACGCGCTGAAATTGCACGTTAGAAAGCATACCGGCGAAAAACCCTACGCTTGTATGTATTGCGAGTATAGGTGTGCGGATCCCAGCGTGTTGAAATGTCATCATAAAGTACATAATAACGATAGAGCGTTCGTTTGTAAGGAGTGTGGACATAGGTTTGTTAGGTCGACCGATTTGAATCGTCATATGAAAAAGCACACGGGGGAGAAATCGATTCAATGTGATTTGTGCGAGTACAGGACGAATCGTCCGAGTGCGTTGAGGAGTCACATGCGAAGACACTCGGAAGAGTATTCGTGTGAGTATTGCGAGTACAAAACCACGCTGCAACGTTTGTGGAAACAACACTTGGCGAGTCACCCCGAGCACAAGCCGTTACAATGCGAGCTGTGCGAGTTTAGGTGTAGTAAATCGTGCGATTTGAAGCGTCATCATTTCAGAAATCACTTGGCTGTTAAACCGTATAGTTGTGAGTTTTGTGATTTCAGAACGGACAGGACGGATACGTTATACCGGCATAGGATGAATCATACCGGGATAAAACCGTTTGCATGTCCGCTGTGTGACTACACGGCGACGCGTGGCATTAATGTAAAGAAACATTTGAGGAGAGTGCATCGTATGGGAGAGATGCCGATAGTAAGAATAGGCGGGAAGGGTGGTGGGGGTTTGGTGGGAAACCAAATTGCGAACGAAAGTTTTCAAAGTGATGATTTGTTTGGCAGTTGCCAACAAAAC
- Protein Sequence
- AQVSAENPVEGGGVFGEEEEEGADKQGLHSIFSASTLDSTLANRVASTVEHVVQNSVVFNQGTANYSCAHCDYVCTDDGELRIHIRSHKGEKLFACKLCEYKSSREKDLDRHMSKHTGVKEFRCEICGYETPRADALKLHVRKHTGEKPYVCKYCDYRCADPSVLNCHHKVHNNQRAFVCKECGHKFIRSTDLNRHMKKHTGEKPIQCELCSYKTNRPSALKNHMRQHSNEYNCEYCEFTCWLKREFTAHMRATHAQHKPYKCDVCEYSSVRAKDLKRHQRRIHRKNELPYSCRYCKFRTDRRKRLVEHVGKKHEDWALEDEMEVELARTSEESGGEEEEDEEGDEENYHHFEPMVEIDLEKQVDEVVVIKMEPDEEDMEEEGVGDEECLASYGEESNYSNSPSNRNHDRFICAHCNFETEKKYVLRNHLQTHSEEKVLSCELCDYRCARQNDMDRHQRKHTGDKPYSCQYCDYETTRSDALKLHVRKHTGEKPYACMYCEYRCADPSVLKCHHKVHNNDRAFVCKECGHRFVRSTDLNRHMKKHTGEKSIQCDLCEYRTNRPSALRSHMRRHSEEYSCEYCEYKTTLQRLWKQHLASHPEHKPLQCELCEFRCSKSCDLKRHHFRNHLAVKPYSCEFCDFRTDRTDTLYRHRMNHTGIKPFACPLCDYTATRGINVKKHLRRVHRMGEMPIVRIGGKGGGGLVGNQIANESFQSDDLFGSCQQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -