Basic Information

Insect: Sogatella furcifera
Gene Symbol: -
Assembly: GCA_014356515.1
Location: chr3:37505995-37543520[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.018 0.94 10.3 2.4 4 23 287 306 287 306 0.97

2 19 0.00028 0.015 16.0 5.3 1 23 312 334 312 334 0.99

3 19 0.00024 0.013 16.2 2.2 1 23 340 362 340 362 0.98

4 19 0.0043 0.22 12.3 6.3 1 23 427 449 427 449 0.97

5 19 0.009 0.47 11.2 5.7 1 23 455 477 455 477 0.98

6 19 0.011 0.59 10.9 0.7 1 23 483 506 483 506 0.97

7 19 9.8e-05 0.005 17.4 0.7 1 23 512 534 512 534 0.99

8 19 2.5e-05 0.0013 19.3 1.8 1 23 540 562 540 562 0.98

9 19 0.00037 0.019 15.6 0.1 1 23 568 590 568 590 0.98

10 19 0.00088 0.046 14.4 3.2 1 23 596 618 596 618 0.97

11 19 7.7e-05 0.004 17.8 2.1 1 23 624 646 624 646 0.97

12 19 0.1 5.3 7.9 7.1 1 23 652 675 652 675 0.96

13 19 0.61 32 5.5 8.3 1 23 713 735 713 735 0.98

14 19 0.0011 0.058 14.1 4.4 1 23 741 763 741 763 0.99

15 19 0.017 0.86 10.4 0.9 1 23 769 792 769 792 0.97

16 19 0.00029 0.015 15.9 3.1 1 23 798 820 798 820 0.99

17 19 2.2e-05 0.0011 19.5 3.2 1 23 826 848 826 848 0.98

18 19 0.0018 0.093 13.4 0.5 1 23 854 876 854 876 0.98

19 19 4.6e-05 0.0024 18.5 3.1 1 23 882 904 882 904 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.018	0.94	10.3	2.4	4	23	287	306	287	306	0.97
2	19	0.00028	0.015	16.0	5.3	1	23	312	334	312	334	0.99
3	19	0.00024	0.013	16.2	2.2	1	23	340	362	340	362	0.98
4	19	0.0043	0.22	12.3	6.3	1	23	427	449	427	449	0.97
5	19	0.009	0.47	11.2	5.7	1	23	455	477	455	477	0.98
6	19	0.011	0.59	10.9	0.7	1	23	483	506	483	506	0.97
7	19	9.8e-05	0.005	17.4	0.7	1	23	512	534	512	534	0.99
8	19	2.5e-05	0.0013	19.3	1.8	1	23	540	562	540	562	0.98
9	19	0.00037	0.019	15.6	0.1	1	23	568	590	568	590	0.98
10	19	0.00088	0.046	14.4	3.2	1	23	596	618	596	618	0.97
11	19	7.7e-05	0.004	17.8	2.1	1	23	624	646	624	646	0.97
12	19	0.1	5.3	7.9	7.1	1	23	652	675	652	675	0.96
13	19	0.61	32	5.5	8.3	1	23	713	735	713	735	0.98
14	19	0.0011	0.058	14.1	4.4	1	23	741	763	741	763	0.99
15	19	0.017	0.86	10.4	0.9	1	23	769	792	769	792	0.97
16	19	0.00029	0.015	15.9	3.1	1	23	798	820	798	820	0.99
17	19	2.2e-05	0.0011	19.5	3.2	1	23	826	848	826	848	0.98
18	19	0.0018	0.093	13.4	0.5	1	23	854	876	854	876	0.98
19	19	4.6e-05	0.0024	18.5	3.1	1	23	882	904	882	904	0.97

Sequence Information

Coding Sequence: ATGAAGAGTCATCAAGAGTGGTACAATAATGATCTTGCTGCAATCAAGGGAGTAATGCTGGCTTTAAAGGATAAGTGTGAAGGTGGTGATGATGGTGACAGGGAGAGACGTGCTAAATCCATCTACAAAAAGCAAGTTGATTTGGCTAGAAAGCATGTAACAGCAGCCAAAATTGAAAACCGCTGTAAGGCAGCCTGGGATGTTATAAATTCCCATCGTTCCTTGCCAGGGAGAAAATTGGACTTTGCAAGTCTGGATGCATTCAATGATTTCTTCATTGAATCAGTGAATAGCATTAGATCTGAGGCGATCATCCCATCATCGATTTCGATGAATTCTGAATTGGACCGCTATCGGGACAATGAGTCTTGTGTTAAGAGCGAAGACATGGATTCAACAGGCGATATCTCTAATGAAGGGTCAGAACCATCAGAAGACTTGAAAACTGAGATTGAAATTGACAAAAGTCCCTACTGGTCAGTTATCGGGGAGGAACAGGTGGACATCAAACAAGAAAAGATGAAGACTATTGACAATAGCAGCAATGAACCTGATTCAGAAGCCGATAATTCAAGCTTGGAGGATGATAATGCTAACCAGAATGATACAAGCTTAGGCTGCTTCTATCAAATAGATTTCGATGAAGATATGCAAGTTATAGAAGATTCTGATGGATGCTCAGAGGCTCAATACCACATACCGTTGTACAGGGAAATGGAGCCTTCACCTCCTATCTGCAGTACATCTAGACCTGATTGTGCATCAGAAAATGATGCAATGCACAGCAGTAAGATTGGACAGTGTCAACGGGAAAAGATTACTGAGCGGACTGTCGATGGCAAAATTTCCCATAGTTATCCTCACTGTAGCTATAAAACTTCACATTCAGGTACTTTGAATAGACATATCAGATTACATACTGGTGAGAAACCATTCAAATGTCAGTTTTGTAATCATAGAACGTCAGATAAAAGTTCTCTGAAAAAACACCTTATAACGCACTCATCTGAAAAAAAGTTTAGCTGTGACTTATGTGACTTCAAAACCTCATACGAATCTTATTTGAAAAAACACGTTAGAACACATTCGAGGACTGTAAATCACAAACCAGTGGAAAAGGAATTGGAGCCTTCTACTCTCATTTGCAGCACATCTAGCCTCAGTTGTGAAACAGAAGATGGTGGAATGCAAAGCGAGAATGAGTACATTCTCATTAATGAGATTGGACAATGTAAATTGGATAAGAGTACTGACCGGACTGTTGATGGCAAAATTTCCCATAGTTGTCCTCATTGTAGCTATAAAACTTCCCATTCAGGATCTATGAACAGACATATCAGATTACATACTGGTGAGAAACCATTCAAATGTCAGTTTTGTGATCATAGATCTCCAGATAAACATTCTTTGAAAAAACACCTTGTAACACATTCATCTGAAAAAAATTTCAGCTGTGAACTGTGTGACTTCAAAACCTCATATGAATGGTATTTGGAGATACATCTTAGAAATCGTCATACTAAAGAAAAACCTTTTACTTGTAATCTCTGTGATTATAAAGCCAGTACTCCCCAAGGTTTAAAGATGCATATGAGAAGACATACAGGCGAAAAACCTTACAGCTGCAAGCTATGTGACTATAAATGCTCCAGATCTGGTATGTTAATTGCACATCAACGAGTCCATTCAGGGGAAAAACCTTTCAGCTGTGACTTGTGTGACTTTAAAACCGCTGTGGCAGGTAATTTGGAAGCTCATTTGAGAACACATACAGGTGAGAAACCTTTCAGCTGTGACCTCTGTGATTATCGATGTACTCAGAAAGCTCGTTTGAAAAGACATCTCTCAATACATACTGTTGATAGGCCATTCATTTGTGAATTTTGTGGTCTCACATTCCATGATAAAGATTATTTGAGTAAACATTTAAAAATACATTCTGCAACAAAACGTTACAGCTGTAATCTATGTGAATACAAATGCCATAGGTTATACAATTTGAAAACTCATCGTATAAGAAGACATCCAGAGGCTGTAGACTCCAATCCAAAATCTCATTGCAGCAAATCTAACCTAGATTGTCAAACAGAAGATGACGAAAAAAATACAAAGCCGACTGTTACTGCAAAAATTCCCTACAGTTGTGATCACTGTAGCTATAAAACTCATCATAAAGGTATTCTAAGGAGACATATTAGAAAACATACTGGTGAAAAACCGTTCCAATGCACACTTTGTGATCATAGAACCGCAGATAAACATTCTTTAAAAACACACCTTATAACACATTCATCTGAAAAAAATTTCAGCTGTCAACTGTGTGACTTCAAAACCTCATATGAATGGTATTTGGAGATACATCTTAGAAATCGCCATACCAAAGAAAAACCTTTCACCTGTAATTTCTGTGATTATAATACCAGTACTTCCCAGAGTTTGAAGATGCATCTGAGAAGACACACGGGCGAAAAACCTTACAGCTGTAAACTATGTGACTATAAATGCGCTACTTCTAGTAATTTGAGTCAACACCAACGAGTCCATTCAGGGGAAAAACCTTTCAGCTGTGACTTATGTGATTTTAAAGCTTCTCTTCTAACTAATTTGAAAGCTCATCTCAGAACTCATTCAGGTGAAAACCCTTTCAGCTGTGACTACTGTGATTATCGTTGTACACAGAAAGCTAGTTTGAAAAAACACCTGGAAATACACTCTGATGATAAATGA
Protein Sequence: MKSHQEWYNNDLAAIKGVMLALKDKCEGGDDGDRERRAKSIYKKQVDLARKHVTAAKIENRCKAAWDVINSHRSLPGRKLDFASLDAFNDFFIESVNSIRSEAIIPSSISMNSELDRYRDNESCVKSEDMDSTGDISNEGSEPSEDLKTEIEIDKSPYWSVIGEEQVDIKQEKMKTIDNSSNEPDSEADNSSLEDDNANQNDTSLGCFYQIDFDEDMQVIEDSDGCSEAQYHIPLYREMEPSPPICSTSRPDCASENDAMHSSKIGQCQREKITERTVDGKISHSYPHCSYKTSHSGTLNRHIRLHTGEKPFKCQFCNHRTSDKSSLKKHLITHSSEKKFSCDLCDFKTSYESYLKKHVRTHSRTVNHKPVEKELEPSTLICSTSSLSCETEDGGMQSENEYILINEIGQCKLDKSTDRTVDGKISHSCPHCSYKTSHSGSMNRHIRLHTGEKPFKCQFCDHRSPDKHSLKKHLVTHSSEKNFSCELCDFKTSYEWYLEIHLRNRHTKEKPFTCNLCDYKASTPQGLKMHMRRHTGEKPYSCKLCDYKCSRSGMLIAHQRVHSGEKPFSCDLCDFKTAVAGNLEAHLRTHTGEKPFSCDLCDYRCTQKARLKRHLSIHTVDRPFICEFCGLTFHDKDYLSKHLKIHSATKRYSCNLCEYKCHRLYNLKTHRIRRHPEAVDSNPKSHCSKSNLDCQTEDDEKNTKPTVTAKIPYSCDHCSYKTHHKGILRRHIRKHTGEKPFQCTLCDHRTADKHSLKTHLITHSSEKNFSCQLCDFKTSYEWYLEIHLRNRHTKEKPFTCNFCDYNTSTSQSLKMHLRRHTGEKPYSCKLCDYKCATSSNLSQHQRVHSGEKPFSCDLCDFKASLLTNLKAHLRTHSGENPFSCDYCDYRCTQKASLKKHLEIHSDDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -