Sfur002033.1
Basic Information
- Insect
- Sogatella furcifera
- Gene Symbol
- -
- Assembly
- GCA_014356515.1
- Location
- chr5:7315757-7327891[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.036 1.9 9.3 2.7 1 23 115 138 115 138 0.97 2 23 0.025 1.3 9.9 0.4 6 23 165 182 163 182 0.95 3 23 0.0021 0.11 13.2 3.7 1 23 188 210 188 210 0.98 4 23 0.00048 0.025 15.3 1.5 1 23 216 238 216 238 0.98 5 23 0.0021 0.11 13.2 5.1 1 23 244 266 244 266 0.98 6 23 0.00014 0.0074 16.9 1.4 1 23 272 294 272 294 0.98 7 23 0.00026 0.013 16.1 5.3 1 23 300 322 300 322 0.99 8 23 7.8e-05 0.004 17.7 5.0 1 23 328 350 328 350 0.98 9 23 0.0002 0.01 16.5 2.3 1 23 356 378 356 378 0.98 10 23 0.004 0.21 12.4 7.1 1 23 384 406 384 406 0.98 11 23 0.0054 0.28 11.9 2.1 1 23 412 434 412 434 0.96 12 23 0.004 0.21 12.4 7.1 1 23 440 462 440 462 0.98 13 23 3.3e-05 0.0017 18.9 1.0 1 23 468 490 468 490 0.98 14 23 5.6e-05 0.0029 18.2 2.6 1 23 496 518 496 518 0.98 15 23 0.036 1.9 9.3 2.7 1 23 597 620 597 620 0.97 16 23 0.00016 0.0084 16.7 1.7 1 23 670 692 670 692 0.98 17 23 0.0018 0.091 13.5 1.5 1 23 698 720 698 720 0.98 18 23 0.005 0.26 12.1 4.1 1 23 726 748 726 748 0.98 19 23 0.00013 0.0067 17.0 1.3 1 23 754 776 754 776 0.98 20 23 0.00092 0.048 14.4 4.8 1 23 782 804 782 804 0.98 21 23 0.0029 0.15 12.8 4.2 2 23 811 832 810 832 0.96 22 23 0.004 0.21 12.4 7.1 1 23 838 860 838 860 0.98 23 23 7.4e-06 0.00038 21.0 1.1 1 23 866 888 866 888 0.97
Sequence Information
- Coding Sequence
- ATGATGATTCCAGTGGATGACAAGACTCGTACAACGTTGGCTGGTCAGGAGAGAGATCAAGCATCAGAGTACAATGCATTGTCTCAATGCAGGGAAAAGGCAGAAATAGATTCCACCACATTGATCAAACAGGAAGAAGTGTGTGATTCCCATTCCATTGAAGAATGTGCTGTTGATACAGGATTTGAAGACAGCAAGGACACATTGAGTTTGATTTCTTTGGAAGGGGACAGCATTCCGTCTGCAAGTGTCACAAATGGACAATCAGTGTGTGTTGAAGTTGCCAAACAGACAACAGCTGCTGAGAATAATCGGCCAACTCATCAAGATCCACAGCAGCCTCACAGATGTGCTCATTGTAGCTATCAATCTCCCACAATTGGAAGTTTGCTGAGACACATCAGAAGAACTCATTCTACTGGGCAGGAAAGCAATCTTGTTCAACAAAACTACAATGACATTAGGATTAACAAGGAACATAAATATAATTCTTGTGAATACAAGACTACCAATTCAAGTGCTTTGAAGACACATATCATGAAACACATAGGGGACAAACGTTTCAGTTGTCATTTCTGTGAATACAAGACTGATGTATCAAGTAATTTGAAGAGACATGTCATGAAACACACAGGGGACAAACCTTACATATGTGAGTTTTGTGATTTTAAGACTAATAATTCAAGTACTTTGAAGACACATGTCATGACACACACAGGGGACAAACCATTCAGCTGTCATTTCTGTGAATACAAGACTACTCAATCGGGTCATTTGAAGATACATGTTATGACACACACAGGGGACAAACCTTACATATGTGAGTCTTGTGATTTCAAGACTACTAATTCAAGTACTTTGAAGAGACATGTCATGACACACACAGGGGACAAACCATTCAGATGTCATTTCTGTGAATACAAGACTTCTCAATCAAGTTATTTGAAGACTCATATCATGACACACACAGGGGACAAACCATTCACTTGTAAGTTTTGTGATTATAAGACTACTCATTCAAGTGATTTGAAGAGACATGTCATGACACACACAGGGGACAAACCTTACATATGTGAGTTTTGTGATTATAAGACTACTCATTCAAGTGCTTTGAAGACACATGTCATGACACACACAGGGGATAAACTTTTCAGCTGTCATTTCTGTGAATACAAGACTAATCATTCAAGTACTTTGAAGAGACATGTCATGACACACACAGGGGACAAACCTTACATATGTGAGTGTTGTGATTATAAGACTACTAATTCAAGTGCTTTGAAGACACATGTCATGACACACACAGGGGATAAACTTTTCAGCTGTCATTTCTGTGAATACAAGACTAATCATTCAAGTACTTTGAAGAGACATGTCATGACACACACAGGGGACAAACCTTACATATGTGAGTTTTGTGATTATAAGACCAATCGATCAAGTGCTTTGAAGACTCATATCATGACACACACAGGGGACAAACCTTACATATGTCAGTTTTGTGATTTTAAGACCACTCAATCACGTAATTTGAAGAGACATATCATGACACACACAGGGGACAAACCTTACATATGTGAGTTTTGTGATTTTAAGACTACTAATTCAAAATGTGCTGTTCATACAGGATTTGAAGACAGCCAGGACAGATTGAGTTTGATTTCTTTGGAAGGGGACAGCATTCCGTCTGCAAGTGTCACAAATGGACAATCAGTGTGTGTTGAAGTTGCCAAACAGACAACAGCTGCTGAGAATAATCGGCCAACTCATCAAGATCCACAGCAGCCTCACAGATGTGCTCATTGTAGCTATCAATCTCCCACAATTGGAAGTTTGCTGAGACACATCAGAAGAACTCATTCTACTGGGGGAAACAGTAATCTTGTTCACCGAAACTACAATGACATTAGCATTTACAAGGAACATAAATCTAATTCTTGTGAATACGAGACTACCAATTCAAGTGCTTTGAAGACAGATATCATGAAACACACAGGGGACAAACCTTACATATGTGAGTTTTGTGATTTTAAGACTAATAATTCAAGTACTTTGAAGAGACATGTCATGACACACACAGGGGAAAAACCATTCATCTGTGATTTCTGTGAATACAAGACTAATCGATTAAGTACTTTGAAGACACATGTCATGACACACACAGGGGACAAACCATTCAGCTGTCATTTCTGTGAATACAAGACTACTCAATCAAGTCGTTTGAAGATACATGTTATGACACACACAGGGGACAAACCTTACATATGTGAGTCTTGTGATTTCAAGACTACTAATTCAAGTACTTTGAAGACTCATATCATGACACACACAGGGGACAAACCATTCACTTGTAAGTTTTGTGATTATAAGACTACTCATTCAAGTGTTTTGAAGAGACATGTCATGACACACACAGGGGACAAACCTTGCATATGTGAGTTTTGTGATTATAAGACTACTCATTCAAGTGCTTTGAAGACACATGTCATGACACACACAGGGGATAAACCTTTCAGCTGTCATTTCTGTGAATACAAGACTAATCATTCAAGTACTTTGAAGAGACATGTCATGACACACACAGGGGACAAACCTTACATATGTGAGTTGTGTGATTATAGGACCAATCGATCAAGTAATTTGAAGAAGCATCTTAGGGCACATTCAAACTAA
- Protein Sequence
- MMIPVDDKTRTTLAGQERDQASEYNALSQCREKAEIDSTTLIKQEEVCDSHSIEECAVDTGFEDSKDTLSLISLEGDSIPSASVTNGQSVCVEVAKQTTAAENNRPTHQDPQQPHRCAHCSYQSPTIGSLLRHIRRTHSTGQESNLVQQNYNDIRINKEHKYNSCEYKTTNSSALKTHIMKHIGDKRFSCHFCEYKTDVSSNLKRHVMKHTGDKPYICEFCDFKTNNSSTLKTHVMTHTGDKPFSCHFCEYKTTQSGHLKIHVMTHTGDKPYICESCDFKTTNSSTLKRHVMTHTGDKPFRCHFCEYKTSQSSYLKTHIMTHTGDKPFTCKFCDYKTTHSSDLKRHVMTHTGDKPYICEFCDYKTTHSSALKTHVMTHTGDKLFSCHFCEYKTNHSSTLKRHVMTHTGDKPYICECCDYKTTNSSALKTHVMTHTGDKLFSCHFCEYKTNHSSTLKRHVMTHTGDKPYICEFCDYKTNRSSALKTHIMTHTGDKPYICQFCDFKTTQSRNLKRHIMTHTGDKPYICEFCDFKTTNSKCAVHTGFEDSQDRLSLISLEGDSIPSASVTNGQSVCVEVAKQTTAAENNRPTHQDPQQPHRCAHCSYQSPTIGSLLRHIRRTHSTGGNSNLVHRNYNDISIYKEHKSNSCEYETTNSSALKTDIMKHTGDKPYICEFCDFKTNNSSTLKRHVMTHTGEKPFICDFCEYKTNRLSTLKTHVMTHTGDKPFSCHFCEYKTTQSSRLKIHVMTHTGDKPYICESCDFKTTNSSTLKTHIMTHTGDKPFTCKFCDYKTTHSSVLKRHVMTHTGDKPCICEFCDYKTTHSSALKTHVMTHTGDKPFSCHFCEYKTNHSSTLKRHVMTHTGDKPYICELCDYRTNRSSNLKKHLRAHSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -